Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 99 curated entries in PaperBLAST's database that match '2.7.1.7'.

These curated entries have 67 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1609: Shikimate kinase (RefSeq)
is similar to:
PaperBLAST

CCNA_03103: shikimate kinase (EC 2.7.1.71) from Caulobacter crescentus

47% id,
83% cov

A0A0M3KL09: shikimate kinase (EC 2.7.1.71) from Acinetobacter baumannii

38% id,
95% cov

AROK_ECOLI / P0A6D7: Shikimate kinase 1; SK 1; Shikimate kinase I; SKI; EC 2.7.1.71 from Escherichia coli
AroK / b3390: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli
aroK / P0A6D7: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli
P0A6D7: shikimate kinase (EC 2.7.1.71) from Escherichia coli

34% id,
97% cov

More...

Dshi_1308: NADH-quinone oxidoreductase, B subunit (RefSeq)
is similar to:
PaperBLAST

Q57936: polynucleotide 5'-hydroxyl-kinase (EC 2.7.1.78) from Pyrococcus horikoshii

37% id,
86% cov

Dshi_2001: ROK family protein (RefSeq)
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

30% id,
95% cov

Dshi_1268: PfkB domain protein (RefSeq)
is similar to:
PaperBLAST

NK_METJA / Q57849: Nucleoside kinase; NK; ATP-dependent nucleoside monophosphokinase; Cytidine kinase; Guanosine-inosine kinase; EC 2.7.1.213; EC 2.7.1.73 from Methanocaldococcus jannaschii

27% id,
45% cov

Dshi_1777: ATP-dependent protease La (RefSeq)
is similar to:
PaperBLAST

A0A0M3KL09: shikimate kinase (EC 2.7.1.71) from Acinetobacter baumannii

52% id,
16% cov

Dshi_1608: 3-dehydroquinate synthase (RefSeq)
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

33% id,
23% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

41% id,
12% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

30% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

720325-721035 (frame -3) on 57145
is similar to:
PaperBLAST

KITM_HUMAN / O00142: Thymidine kinase 2, mitochondrial; 2'-deoxyuridine kinase TK2; Deoxycytidine kinase TK2; Mt-TK; EC 2.7.1.21; EC 2.7.1.74; EC 2.7.1.- from Homo sapiens
TK2 / O00142: thymidine kinase 2 (EC 2.7.1.74; EC 2.7.1.145) from Homo sapiens

67% id,
9% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory