Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 52 curated entries in PaperBLAST's database that match '2.7.1.8'.

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1655: Glucokinase (RefSeq)
is similar to:
PaperBLAST

Glk / b2388: glucokinase (EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.8) from Escherichia coli
glk / P0A6V8: glucokinase (EC 2.7.1.1; EC 2.7.1.8) from Escherichia coli

30% id,
97% cov

Dshi_2797: PfkB domain protein (RefSeq)
is similar to:
PaperBLAST

SM_b21217: glucosamine kinase (EC 2.7.1.8) from Sinorhizobium meliloti

32% id,
77% cov

Dshi_1976: PfkB domain protein (RefSeq)
is similar to:
PaperBLAST

PSUK_ECOLI / P30235: Pseudouridine kinase; EC 2.7.1.83 from Escherichia coli
PsuK / b2166: putative pseudouridine kinase (EC 2.7.1.83) from Escherichia coli
P30235: pseudouridine kinase (EC 2.7.1.83) from Escherichia coli

25% id,
90% cov

yeiC / Q1R9Q6: pseudouridine kinase (EC 2.7.1.83) from Escherichia coli

25% id,
80% cov

Dshi_2110: Indigoidine synthase A family protein (RefSeq)
is similar to:
PaperBLAST

YOW5_SCHPO / Q9USY1: Pseudouridine-metabolizing bifunctional protein C1861.05; EC 4.2.1.70; EC 2.7.1.83 from Schizosaccharomyces pombe

52% id,
39% cov

Dshi_1547: PfkB domain protein (RefSeq)
is similar to:
PaperBLAST

PUKI_ARATH / Q94AT3: Pseudouridine kinase; EC 2.7.1.83 from Arabidopsis thaliana

27% id,
64% cov

Dshi_0822: NAD(+) kinase (RefSeq)
is similar to:
PaperBLAST

P21373: NAD+ kinase (EC 2.7.1.23); NADH kinase (EC 2.7.1.86) from Strongylocentrotus purpuratus

30% id,
38% cov

YEF1_YEAST / P32622: ATP-NADH kinase YEF1; EC 2.7.1.86 from Saccharomyces cerevisiae
P32622: NAD+ kinase (EC 2.7.1.23); NADH kinase (EC 2.7.1.86) from Saccharomyces cerevisiae

25% id,
45% cov

Dshi_1110: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

CHKA_HUMAN / P35790: Choline kinase alpha; CK; CHETK-alpha; Ethanolamine kinase; EK; EC 2.7.1.32; EC 2.7.1.82 from Homo sapiens

51% id,
8% cov

CHKA_HUMAN / P35790: Choline kinase alpha; CK; CHETK-alpha; Ethanolamine kinase; EK; EC 2.7.1.32; EC 2.7.1.82 from Homo sapiens

43% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory