Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 13 curated entries in PaperBLAST's database that match '2.7.1.92' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1268: PfkB domain protein (RefSeq)
is similar to:
PaperBLAST

PGA1_c07240: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) from Phaeobacter inhibens

81% id,
96% cov

IOLC_BACSU / P42414: 5-dehydro-2-deoxygluconokinase; 2-deoxy-5-keto-D-gluconate kinase; DKG kinase; EC 2.7.1.92 from Bacillus subtilis
iolC / P42414: 5-dehydro-2-deoxy-D-gluconate kinase (EC 2.7.1.92) from Bacillus subtilis

31% id,
96% cov

Pf6N2E2_512: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas fluorescens

33% id,
52% cov

More...

Dshi_3022: PfkB domain protein (RefSeq)
is similar to:
PaperBLAST

PGA1_c07240: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) from Phaeobacter inhibens

29% id,
92% cov

IOLC_BACSU / P42414: 5-dehydro-2-deoxygluconokinase; 2-deoxy-5-keto-D-gluconate kinase; DKG kinase; EC 2.7.1.92 from Bacillus subtilis
iolC / P42414: 5-dehydro-2-deoxy-D-gluconate kinase (EC 2.7.1.92) from Bacillus subtilis

27% id,
90% cov

Dshi_1976: PfkB domain protein (RefSeq)
is similar to:
PaperBLAST

IOLC_BACSU / P42414: 5-dehydro-2-deoxygluconokinase; 2-deoxy-5-keto-D-gluconate kinase; DKG kinase; EC 2.7.1.92 from Bacillus subtilis
iolC / P42414: 5-dehydro-2-deoxy-D-gluconate kinase (EC 2.7.1.92) from Bacillus subtilis

24% id,
95% cov

AO356_23160: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas fluorescens

25% id,
47% cov

BPHYT_RS13910: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Burkholderia phytofirmans

25% id,
44% cov

More...

Dshi_1621: PfkB domain protein (RefSeq)
is similar to:
PaperBLAST

PGA1_c07240: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) from Phaeobacter inhibens

29% id,
53% cov

Dshi_1547: PfkB domain protein (RefSeq)
is similar to:
PaperBLAST

HSERO_RS12125: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Herbaspirillum seropedicae

31% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory