Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 28 curated entries in PaperBLAST's database that match '2.7.2.1' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_5006: hypothetical protein (NCBI)
is similar to:
PaperBLAST

ACKA_CORGL / P77845: Acetate kinase; Acetokinase; EC 2.7.2.1 from Corynebacterium glutamicum

39% id,
99% cov

G4T0C7: acetate kinase (EC 2.7.2.1) from Methylomicrobium alcaliphilum

40% id,
97% cov

ACKA_BACSU / P37877: Acetate kinase; Acetokinase; EC 2.7.2.1 from Bacillus subtilis

39% id,
99% cov

More...

Dshi_0632: acetate kinase (RefSeq)
is similar to:
PaperBLAST

Q9F1X7: acetate kinase (EC 2.7.2.1) from Lactobacillus sanfranciscensis

39% id,
99% cov

ACKA_ECOLI / P0A6A3: Acetate kinase; Acetokinase; EC 2.7.2.1 from Escherichia coli
AckA / b2296: acetate kinase (EC 2.7.2.15; EC 2.7.2.1; EC 2.7.2.7; EC 2.7.2.14) from Escherichia coli
ackA / RF|NP_416799: acetate kinase; EC 2.7.2.1 from Escherichia coli
P0A6A3: acetate kinase (EC 2.7.2.1) from Escherichia coli

38% id,
98% cov

ACKA_SALTY / P63411: Acetate kinase AckA; Acetokinase; EC 2.7.2.1 from Salmonella typhimurium
P63411: acetate kinase (EC 2.7.2.1) from Salmonella enterica

38% id,
98% cov

More...

Dshi_0680: phosphoribosylaminoimidazole carboxylase, ATPase subunit (RefSeq)
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

30% id,
92% cov

Dshi_1395: acetyl-CoA carboxylase, biotin carboxylase (RefSeq)
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

24% id,
97% cov

Dshi_1301: Carbamoyl-phosphate synthase L chain ATP-binding (RefSeq)
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

27% id,
76% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory