Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 17 curated entries in PaperBLAST's database that match '3.1.1.25' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1240: SMP-30/Gluconolaconase/LRE domain protein (RefSeq)
is similar to:
PaperBLAST

SMc00883: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Sinorhizobium meliloti

36% id,
93% cov

Ac3H11_615: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Acidovorax sp.

35% id,
88% cov

AO356_20235: L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) from Pseudomonas fluorescens

32% id,
92% cov

Dshi_0338: beta-lactamase domain protein (RefSeq)
is similar to:
PaperBLAST

P0CJ63: 1,4-lactonase (EC 3.1.1.25) from Bacillus thuringiensis

27% id,
92% cov

Dshi_3391: beta-lactamase domain protein (RefSeq)
is similar to:
PaperBLAST

P0CJ63: 1,4-lactonase (EC 3.1.1.25) from Bacillus thuringiensis

29% id,
82% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory