Curated BLAST for Genomes


Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 3 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1240: SMP-30/Gluconolaconase/LRE domain protein (RefSeq)
is similar to:

XACC_HALVD / D4GP31: Pentonolactonase XacC; L-arabinonolactonase; Xylono-1,4-lactonase; EC; EC from Haloferax volcanii
xacC / D4GP31: D-xylono/L-arabinono-1,4-lactonase (EC; EC from Haloferax volcanii

33% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory