Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 16 curated entries in PaperBLAST's database that match '3.1.2.4'.

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1751: Enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

PGA1_c17350: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Phaeobacter inhibens

57% id,
100% cov

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis

37% id,
92% cov

PfGW456L13_2986: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas fluorescens

34% id,
99% cov

More...

Dshi_1048: Enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis

33% id,
65% cov

Pf1N1B4_4790: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas fluorescens

25% id,
78% cov

PS417_13835: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas simiae

31% id,
62% cov

More...

Dshi_3826: 3-hydroxyacyl-CoA dehydrogenase NAD-binding (RefSeq)
is similar to:
PaperBLAST

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis

29% id,
72% cov

Psest_2439: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas stutzeri

29% id,
67% cov

Pf1N1B4_4790: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas fluorescens

32% id,
47% cov

More...

Dshi_1753: Enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis

33% id,
58% cov

Psest_2439: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas stutzeri

25% id,
75% cov

PGA1_c17350: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Phaeobacter inhibens

29% id,
66% cov

More...

Dshi_3329: Enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

Psest_2439: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas stutzeri

27% id,
65% cov

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis

28% id,
57% cov

PGA1_c17350: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Phaeobacter inhibens

27% id,
59% cov

More...

Dshi_1604: Enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

HIBCH_RAT / Q5XIE6: 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; 3-hydroxyisobutyryl-coenzyme A hydrolase; HIB-CoA hydrolase; HIBYL-CoA-H; EC 3.1.2.4 from Rattus norvegicus
Hibch / Q5XIE6: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Rattus norvegicus

29% id,
59% cov

HIBC1_ARATH / Q9LKJ1: 3-hydroxyisobutyryl-CoA hydrolase 1; CoA-thioester hydrolase CHY1; EC 3.1.2.-; EC 3.1.2.4 from Arabidopsis thaliana
Q9LKJ1: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Arabidopsis thaliana

24% id,
68% cov

bch / Q81DR3: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Bacillus cereus
Q81DR3: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Bacillus cereus

32% id,
41% cov

Dshi_1304: Enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

HIBC1_ARATH / Q9LKJ1: 3-hydroxyisobutyryl-CoA hydrolase 1; CoA-thioester hydrolase CHY1; EC 3.1.2.-; EC 3.1.2.4 from Arabidopsis thaliana
Q9LKJ1: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Arabidopsis thaliana

29% id,
51% cov

Dshi_3370: Enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:
PaperBLAST

Psest_2439: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Pseudomonas stutzeri

27% id,
51% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

32394-34445 (frame +3) on 57147
is similar to:
PaperBLAST

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis
Also see hits to annotated proteins above

28% id,
76% cov

1819179-1819982 (frame -1) on 57145
is similar to:
PaperBLAST

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis
Also see hits to annotated proteins above

32% id,
63% cov

HIBCH_YEAST / P28817: 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; 3-hydroxyisobutyryl-coenzyme A hydrolase; HIB-CoA hydrolase; HIBYL-CoA-H; Mitochondrial small ribosomal subunit protein mS47; EC 3.1.2.4 from Saccharomyces cerevisiae
Also see hits to annotated proteins above

27% id,
45% cov

EHD3 / Q5AI24: 3-hydroxypropanonyl-CoA hydrolase (EC 3.1.2.4) from Candida albicans
Also see hits to annotated proteins above

27% id,
34% cov

3492300-3494198 (frame +3) on 57145
is similar to:
PaperBLAST

RR42_RS28545: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Cupriavidus basilensis
Also see hits to annotated proteins above

28% id,
64% cov

HIBCH_RAT / Q5XIE6: 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; 3-hydroxyisobutyryl-coenzyme A hydrolase; HIB-CoA hydrolase; HIBYL-CoA-H; EC 3.1.2.4 from Rattus norvegicus
Hibch / Q5XIE6: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) from Rattus norvegicus
Also see hits to annotated proteins above

28% id,
57% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory