Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 138 curated entries in PaperBLAST's database that match '3.1.3.3'.

These curated entries have 107 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_3316: phosphoserine phosphatase SerB (RefSeq)
is similar to:
PaperBLAST

SERB_POLSJ / Q12A06: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Polaromonas sp.

47% id,
89% cov

SERB_STRT2 / Q5M3B3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Streptococcus thermophilus

44% id,
94% cov

SERB_ALBFT / Q21YU0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Albidiferax ferrireducens

46% id,
88% cov

More...

Dshi_2274: fructose-1,6-bisphosphatase, class II (RefSeq)
is similar to:
PaperBLAST

B1XLK5: fructose-bisphosphatase (EC 3.1.3.11); sedoheptulose-bisphosphatase (EC 3.1.3.37) from Synechococcus sp.

41% id,
95% cov

slr2094 / P73922: fructose bisphosphatase F-I monomer (EC 3.1.3.11; EC 3.1.3.37) from Synechocystis sp.
P73922: fructose-bisphosphatase (EC 3.1.3.11); sedoheptulose-bisphosphatase (EC 3.1.3.37) from Synechocystis sp.

41% id,
95% cov

FBSB_SYNE7 / Q31QY2: D-fructose 1,6-bisphosphatase class 2/sedoheptulose 1,7-bisphosphatase; FBPase class 2/SBPase; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 2; Fructose-1,6-bisphosphatase F-I; EC 3.1.3.11; EC 3.1.3.37 from Synechococcus elongatus
Q31QY2: fructose-bisphosphatase (EC 3.1.3.11); sedoheptulose-bisphosphatase (EC 3.1.3.37) from Synechococcus elongatus

40% id,
95% cov

More...

Dshi_0849: 5'-Nucleotidase domain protein (RefSeq)
is similar to:
PaperBLAST

5NTD_HUMAN / P21589: 5'-nucleotidase; 5'-NT; 5'-deoxynucleotidase; Ecto-5'-nucleotidase; IMP-specific 5'-nucleotidase; Thymidylate 5'-phosphatase; CD73 antigen; EC 3.1.3.35; EC 3.1.3.5; EC 3.1.3.89; EC 3.1.3.91; EC 3.1.3.99 from Homo sapiens

36% id,
95% cov

5NTD_BOVIN / Q05927: 5'-nucleotidase; 5'-NT; 5'-deoxynucleotidase; Ecto-5'-nucleotidase; IMP-specific 5'-nucleotidase; Thymidylate 5'-phosphatase; CD73 antigen; EC 3.1.3.35; EC 3.1.3.5; EC 3.1.3.89; EC 3.1.3.91; EC 3.1.3.99 from Bos taurus

37% id,
93% cov

5NTD_MOUSE / Q61503: 5'-nucleotidase; 5'-NT; 5'-deoxynucleotidase; Ecto-5'-nucleotidase; IMP-specific 5'-nucleotidase; Thymidylate 5'-phosphatase; CD73 antigen; EC 3.1.3.35; EC 3.1.3.5; EC 3.1.3.89; EC 3.1.3.91; EC 3.1.3.99 from Mus musculus

36% id,
93% cov

More...

Dshi_3318: D-3-phosphoglycerate dehydrogenase (RefSeq)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

35% id,
59% cov

Dshi_2700: haloacid dehalogenase, type II (RefSeq)
is similar to:
PaperBLAST

PSP_THET2 / Q72H00: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Thermus thermophilus

34% id,
60% cov

Dshi_2803: 5'-Nucleotidase domain protein (RefSeq)
is similar to:
PaperBLAST

5NTD_HUMAN / P21589: 5'-nucleotidase; 5'-NT; 5'-deoxynucleotidase; Ecto-5'-nucleotidase; IMP-specific 5'-nucleotidase; Thymidylate 5'-phosphatase; CD73 antigen; EC 3.1.3.35; EC 3.1.3.5; EC 3.1.3.89; EC 3.1.3.91; EC 3.1.3.99 from Homo sapiens

26% id,
75% cov

5NTD_BOVIN / Q05927: 5'-nucleotidase; 5'-NT; 5'-deoxynucleotidase; Ecto-5'-nucleotidase; IMP-specific 5'-nucleotidase; Thymidylate 5'-phosphatase; CD73 antigen; EC 3.1.3.35; EC 3.1.3.5; EC 3.1.3.89; EC 3.1.3.91; EC 3.1.3.99 from Bos taurus

26% id,
73% cov

5NTD_RAT / P21588: 5'-nucleotidase; 5'-NT; 5'-deoxynucleotidase; Ecto-5'-nucleotidase; IMP-specific 5'-nucleotidase; Thymidylate 5'-phosphatase; CD73 antigen; EC 3.1.3.35; EC 3.1.3.5; EC 3.1.3.89; EC 3.1.3.91; EC 3.1.3.99 from Rattus norvegicus

27% id,
57% cov

More...

Dshi_3485: response regulator receiver modulated serine phosphatase (RefSeq)
is similar to:
PaperBLAST

O07014: phosphoserine phosphatase (EC 3.1.3.3) from Bacillus subtilis

26% id,
72% cov

RSBU_BACSU / P40399: Phosphoserine phosphatase RsbU; Sigma factor SigB regulation protein RsbU; EC 3.1.3.3 from Bacillus subtilis
P40399: phosphoserine phosphatase (EC 3.1.3.3) from Bacillus subtilis

24% id,
72% cov

Dshi_0667: heavy metal translocating P-type ATPase (RefSeq)
is similar to:
PaperBLAST

SERB_ALBFT / Q21YU0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Albidiferax ferrireducens

31% id,
55% cov

Dshi_2189: 5'-Nucleotidase domain protein (RefSeq)
is similar to:
PaperBLAST

5NTD_MOUSE / Q61503: 5'-nucleotidase; 5'-NT; 5'-deoxynucleotidase; Ecto-5'-nucleotidase; IMP-specific 5'-nucleotidase; Thymidylate 5'-phosphatase; CD73 antigen; EC 3.1.3.35; EC 3.1.3.5; EC 3.1.3.89; EC 3.1.3.91; EC 3.1.3.99 from Mus musculus

26% id,
54% cov

5NTD_RAT / P21588: 5'-nucleotidase; 5'-NT; 5'-deoxynucleotidase; Ecto-5'-nucleotidase; IMP-specific 5'-nucleotidase; Thymidylate 5'-phosphatase; CD73 antigen; EC 3.1.3.35; EC 3.1.3.5; EC 3.1.3.89; EC 3.1.3.91; EC 3.1.3.99 from Rattus norvegicus

26% id,
54% cov

5NTD_BOVIN / Q05927: 5'-nucleotidase; 5'-NT; 5'-deoxynucleotidase; Ecto-5'-nucleotidase; IMP-specific 5'-nucleotidase; Thymidylate 5'-phosphatase; CD73 antigen; EC 3.1.3.35; EC 3.1.3.5; EC 3.1.3.89; EC 3.1.3.91; EC 3.1.3.99 from Bos taurus

26% id,
52% cov

Dshi_1001: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

35% id,
39% cov

Dshi_2970: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

29% id,
48% cov

Dshi_2643: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

29% id,
44% cov

Dshi_2013: Haloacid dehalogenase domain protein hydrolase (RefSeq)
is similar to:
PaperBLAST

PSP_BACSU / P94512: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Bacillus subtilis

29% id,
25% cov

Dshi_1797: protein of unknown function DUF610, YibQ (RefSeq)
is similar to:
PaperBLAST

SYNJ1_HUMAN / O43426: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; EC 3.1.3.36 from Homo sapiens
SYNJ1 / O43426: synaptojanin 1 (EC 3.1.3.56; EC 3.1.3.86; EC 3.1.3.36) from Homo sapiens

22% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 20 reading frames. Except for 10 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1025152-1025460 (frame +1) on 57145
is similar to:
PaperBLAST

INP5E_HUMAN / Q9NRR6: Phosphatidylinositol polyphosphate 5-phosphatase type IV; 72 kDa inositol polyphosphate 5-phosphatase; Inositol polyphosphate-5-phosphatase E; Phosphatidylinositol 4,5-bisphosphate 5-phosphatase; Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase; EC 3.1.3.36; EC 3.1.3.86 from Homo sapiens
INPP5E / Q9NRR6: type IV inositol polyphosphate 5-phosphatase (EC 3.1.3.36; EC 3.1.3.86) from Homo sapiens
Q9NRR6: phosphoinositide 5-phosphatase (EC 3.1.3.36) from Homo sapiens

33% id,
15% cov

3289801-3290175 (frame +1) on 57145
is similar to:
PaperBLAST

INP5E_HUMAN / Q9NRR6: Phosphatidylinositol polyphosphate 5-phosphatase type IV; 72 kDa inositol polyphosphate 5-phosphatase; Inositol polyphosphate-5-phosphatase E; Phosphatidylinositol 4,5-bisphosphate 5-phosphatase; Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase; EC 3.1.3.36; EC 3.1.3.86 from Homo sapiens
INPP5E / Q9NRR6: type IV inositol polyphosphate 5-phosphatase (EC 3.1.3.36; EC 3.1.3.86) from Homo sapiens
Q9NRR6: phosphoinositide 5-phosphatase (EC 3.1.3.36) from Homo sapiens

37% id,
14% cov

1358123-1359283 (frame -2) on 57145
is similar to:
PaperBLAST

SYNJ1_HUMAN / O43426: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; EC 3.1.3.36 from Homo sapiens
SYNJ1 / O43426: synaptojanin 1 (EC 3.1.3.56; EC 3.1.3.86; EC 3.1.3.36) from Homo sapiens
Also see hits to annotated proteins above

34% id,
11% cov

811674-812195 (frame +3) on 57145
is similar to:
PaperBLAST

SYNJ1_HUMAN / O43426: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; EC 3.1.3.36 from Homo sapiens
SYNJ1 / O43426: synaptojanin 1 (EC 3.1.3.56; EC 3.1.3.86; EC 3.1.3.36) from Homo sapiens
Also see hits to annotated proteins above

27% id,
12% cov

1841021-1841752 (frame +2) on 57145
is similar to:
PaperBLAST

SYNJ_CAEEL / G5ECL2: Synaptojanin; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase; Uncoordinated protein 26; EC 3.1.3.36 from Caenorhabditis elegans

33% id,
9% cov

413328-413885 (frame -1) on 57145
is similar to:
PaperBLAST

SYNJ1_BOVIN / O18964: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; p150; EC 3.1.3.36 from Bos taurus

33% id,
7% cov

1939847-1940410 (frame -2) on 57145
is similar to:
PaperBLAST

SYNJ1_RAT / Q62910: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; EC 3.1.3.36 from Rattus norvegicus

30% id,
8% cov

70022-70672 (frame -2) on 57150
is similar to:
PaperBLAST

SYNJ1_RAT / Q62910: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; EC 3.1.3.36 from Rattus norvegicus

32% id,
7% cov

14724-15032 (frame -1) on 57145
is similar to:
PaperBLAST

SYNJ1_BOVIN / O18964: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; p150; EC 3.1.3.36 from Bos taurus

32% id,
7% cov

2335573-2336004 (frame -3) on 57145
is similar to:
PaperBLAST

SYNJ1_MOUSE / Q8CHC4: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; EC 3.1.3.36 from Mus musculus

31% id,
7% cov

SYNJ1_RAT / Q62910: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; EC 3.1.3.36 from Rattus norvegicus

31% id,
7% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory