Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 185 curated entries in PaperBLAST's database that match '3.2.1.20' as complete word(s).

These curated entries have 140 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1649: alpha amylase catalytic region (RefSeq)
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

100% id,
100% cov

Q9Z3R8: alpha-glucosidase (EC 3.2.1.20) from Sinorhizobium meliloti

69% id,
93% cov

BAL49684.1: α-glucosidase (AglA;HaG) (EC 3.2.1.20)

59% id,
94% cov

More...

Dshi_3898: alpha amylase catalytic region (RefSeq)
is similar to:
PaperBLAST

Q9Z3R8: alpha-glucosidase (EC 3.2.1.20) from Sinorhizobium meliloti

44% id,
96% cov

BAL49684.1: α-glucosidase (AglA;HaG) (EC 3.2.1.20)

42% id,
94% cov

Psest_0870: Alpha-glucosidase (EC 3.2.1.20) from Pseudomonas stutzeri

44% id,
89% cov

More...

Dshi_1245: glycoside hydrolase family 4 (RefSeq)
is similar to:
PaperBLAST

PALH_ERWRD / Q9AI65: Alpha-glucosidase; EC 3.2.1.20 from Erwinia rhapontici
Q9AI65: alpha-glucosidase (EC 3.2.1.20); 6-phospho-beta-glucosidase (EC 3.2.1.86) from Erwinia rhapontici

28% id,
99% cov

AAK28734.1: α-glucosidase (PalH) (EC 3.2.1.20)

28% id,
96% cov

CAA08868.1: α-glucosidase (AglA) (EC 3.2.1.20)

25% id,
47% cov

More...

Dshi_1824: alpha amylase catalytic region (RefSeq)
is similar to:
PaperBLAST

ABW98683.1: α-glucosidase / binding-toxin receptor (Agm3;AgAgm3) (EC 3.2.1.20)

24% id,
67% cov

BAF44218.1: α-glucosidase I (JBgI) (EC 3.2.1.20)
A1IHL0: alpha-glucosidase (EC 3.2.1.20) from Apis cerana

23% id,
56% cov

BAE86926.1: α-glucosidase I (Hbg1;HBG-I;Loc409889) (EC 3.2.1.20)

23% id,
56% cov

More...

Dshi_1356: hypothetical protein (RefSeq)
is similar to:
PaperBLAST

AAA57881.1: α-glucosidase (YgjK;EcYgjK;b3080) (EC 3.2.1.20|3.2.1.84)
ACB04164.1: ECDH10B_3255 (EC 3.2.1.20|3.2.1.84)
BAE77130.1: ECK3070:JW3051:b3080 (YgjK) (EC 3.2.1.20|3.2.1.84)

29% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory