Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 331 curated entries in PaperBLAST's database that match '3.2.1.23' as complete word(s).

These curated entries have 255 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1239: Beta-galactosidase (RefSeq)
is similar to:
PaperBLAST

ABI35985.1: β-galactosidase (EC 3.2.1.23)

53% id,
95% cov

BGAL_THETH / O69315: Beta-galactosidase; Beta-gal; Lactase; EC 3.2.1.23 from Thermus thermophilus
BAA28362.1: β-galactosidase (A4-β-Gal) (EC 3.2.1.23)

53% id,
95% cov

BGAL2_THESP / O54315: Beta-galactosidase BgaA; Beta-gal; EC 3.2.1.23 from Thermus sp.
CAB07810.1: β-galactosidase (EC 3.2.1.23)

50% id,
100% cov

More...

Dshi_1654: Beta-glucosidase (RefSeq)
is similar to:
PaperBLAST

ABI35984.1: β-glycosidase (β-gly) (EC 3.2.1.21|3.2.1.23)

46% id,
97% cov

A0A1E1FFN6: beta-glucosidase (EC 3.2.1.21); beta-galactosidase (EC 3.2.1.23); beta-D-fucosidase (EC 3.2.1.38) from uncultured microorganism

43% id,
95% cov

ACL74759.1: cellodextrin glucohydrolase (Ccel_0374) (EC 3.2.1.21|3.2.1.23|3.2.1.74)

38% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory