Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 17 curated entries in PaperBLAST's database that match '3.2.1.93' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_3898: alpha amylase catalytic region (RefSeq)
is similar to:
PaperBLAST

BAG86620.1: trehalose-6-phosphate hydrolase (TreC;KP1_0530) (EC 3.2.1.93)

35% id,
99% cov

TREC_BACSU / P39795: Trehalose-6-phosphate hydrolase; Alpha,alpha-phosphotrehalase; Phospho-alpha-(1-1)-glucosidase; EC 3.2.1.93 from Bacillus subtilis
CAB12610.1: trehalose-6-phosphate hydrolase (TreA;BSU07810) (EC 3.2.1.93)
treA / P39795: trehalose-6-phosphate hydrolase (EC 3.2.1.93) from Bacillus subtilis

34% id,
95% cov

AAG31032.1: trehalose-6-phosphate hydrolase (TreA) (EC 3.2.1.93)

34% id,
83% cov

More...

Dshi_1649: alpha amylase catalytic region (RefSeq)
is similar to:
PaperBLAST

PS417_23045: Alpha,alpha-phosphotrehalase (EC 3.2.1.93) from Pseudomonas simiae

35% id,
92% cov

AO353_15985: Alpha,alpha-phosphotrehalase (EC 3.2.1.93) from Pseudomonas fluorescens

35% id,
92% cov

AAG31032.1: trehalose-6-phosphate hydrolase (TreA) (EC 3.2.1.93)

34% id,
92% cov

More...

Dshi_1824: alpha amylase catalytic region (RefSeq)
is similar to:
PaperBLAST

AAV42863.1: LBA1014 (TreC;La1014) (EC 3.2.1.93)

29% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory