Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 6 curated entries in PaperBLAST's database that match '3.5.1.30' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_3506: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq)
is similar to:
PaperBLAST

AO353_07425: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

32% id,
92% cov

Pf1N1B4_2504: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

31% id,
92% cov

Pf6N2E2_4777: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

30% id,
90% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory