Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 20 curated entries in PaperBLAST's database that match '3.5.3.11' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1735: putative agmatinase (RefSeq)
is similar to:
PaperBLAST

SPEB_ECOLI / P60651: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Escherichia coli
SpeB / b2937: agmatinase (EC 3.5.3.11) from Escherichia coli
speB / RF|NP_417412: agmatinase; EC 3.5.3.11 from Escherichia coli
speB / P60651: agmatinase (EC 3.5.3.11) from Escherichia coli

46% id,
98% cov

SPEB_PROMI / Q7X3P1: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis

47% id,
94% cov

W5PHZ9: agmatinase (EC 3.5.3.11) from Ovis aries

42% id,
85% cov

More...

Dshi_2309: arginase (RefSeq)
is similar to:
PaperBLAST

ARGI_MEDTR / G7JFU5: Arginase, mitochondrial; Agmatinase ARGAH; Arginine amidohydrolase; MtARGAH; EC 3.5.3.1; EC 3.5.3.11 from Medicago truncatula

28% id,
77% cov

Q1K7T0: agmatinase (EC 3.5.3.11) from Neurospora crassa

26% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory