Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 12 curated entries in PaperBLAST's database that match '3.5.3.7' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1735: putative agmatinase (RefSeq)
is similar to:
PaperBLAST

gbuA / A0A0A1DPD5: 5-guanidino-2-oxopentanoate ureohydrolase (EC 3.5.3.7) from Nocardioides simplex

41% id,
94% cov

GBUA_PSEAE / Q9I3S3: Guanidinobutyrase; EC 3.5.3.7 from Pseudomonas aeruginosa
gbuA / Q9I3S3: guanidinobutyrase subunit (EC 3.5.3.7) from Pseudomonas aeruginosa
Q9I3S3: guanidinobutyrase (EC 3.5.3.7) from Pseudomonas aeruginosa

38% id,
96% cov

gbuA / Q88EE2: guanidinobutyrase subunit (EC 3.5.3.7) from Pseudomonas putida

38% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory