Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 20 curated entries in PaperBLAST's database that match '3.7.1.2' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_3811: fumarylacetoacetase (RefSeq)
is similar to:
PaperBLAST

FAAA_HUMAN / P16930: Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 from Homo sapiens
FAH / P16930: Fumarylacetoacetase (EC 3.7.1.2) from Homo sapiens
P16930: fumarylacetoacetase (EC 3.7.1.2) from Homo sapiens

51% id,
99% cov

FAHA_ASPFU / Q4WHT8: Fumarylacetoacetase fahA; Fumarylacetoacetate hydrolase fahA; L-tyrosine degradation gene cluster protein fahA; Pyomelanin biosynthesis cluster protein fahA; EC 3.7.1.2 from Aspergillus fumigatus

49% id,
99% cov

FAAA_MOUSE / P35505: Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 from Mus musculus
P35505: fumarylacetoacetase (EC 3.7.1.2) from Mus musculus

49% id,
99% cov

More...

Dshi_2538: fumarylacetoacetate (FAA) hydrolase (RefSeq)
is similar to:
PaperBLAST

A0A0M3SVN7: fumarylacetoacetase (EC 3.7.1.2) from Cupriavidus gilardii

49% id,
98% cov

A0A1B0ZSC0: fumarylacetoacetase (EC 3.7.1.2) from Phaeobacter gallaeciensis

42% id,
98% cov

A0A0D5YDA5: fumarylacetoacetase (EC 3.7.1.2) from Acinetobacter baumannii

32% id,
91% cov

Dshi_2542: 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (RefSeq)
is similar to:
PaperBLAST

K0A9N9: fumarylacetoacetase (EC 3.7.1.2) from Exiguobacterium antarcticum

49% id,
79% cov

A0A0M3SVN7: fumarylacetoacetase (EC 3.7.1.2) from Cupriavidus gilardii

38% id,
88% cov

A0A1B0ZSC0: fumarylacetoacetase (EC 3.7.1.2) from Phaeobacter gallaeciensis

35% id,
94% cov

More...

Dshi_0967: fumarylacetoacetate (FAA) hydrolase (RefSeq)
is similar to:
PaperBLAST

K0A9N9: fumarylacetoacetase (EC 3.7.1.2) from Exiguobacterium antarcticum

36% id,
97% cov

A0A0M3SVN7: fumarylacetoacetase (EC 3.7.1.2) from Cupriavidus gilardii

31% id,
94% cov

A0A0D5YDA5: fumarylacetoacetase (EC 3.7.1.2) from Acinetobacter baumannii

27% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory