Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 17 curated entries in PaperBLAST's database that match '3.7.1.3' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1230: kynureninase (RefSeq)
is similar to:
PaperBLAST

RR42_RS15385: Kynureninase (EC 3.7.1.3) from Cupriavidus basilensis

51% id,
95% cov

PS417_23650: Kynureninase (EC 3.7.1.3) from Pseudomonas simiae

49% id,
95% cov

BPHYT_RS16030: Kynureninase (EC 3.7.1.3) from Burkholderia phytofirmans

49% id,
95% cov

More...

Dshi_1623: cysteine desulfurase, SufS subfamily (RefSeq)
is similar to:
PaperBLAST

KYNU_RAT / P70712: Kynureninase; L-kynurenine hydrolase; EC 3.7.1.3 from Rattus norvegicus
Kynu / P70712: kynureninase subunit (EC 3.7.1.3) from Rattus norvegicus

25% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1273042-1275483 (frame -3) on 57145
is similar to:
PaperBLAST

RR42_RS15385: Kynureninase (EC 3.7.1.3) from Cupriavidus basilensis
Also see hits to annotated proteins above

51% id,
97% cov

AO353_05935: Kynureninase (EC 3.7.1.3) from Pseudomonas fluorescens
Also see hits to annotated proteins above

47% id,
98% cov

KYNU_PSEFL / P83788: Kynureninase; L-kynurenine hydrolase; EC 3.7.1.3 from Pseudomonas fluorescens
kyn / P83788: kynureninase subunit (EC 3.7.1.3) from Pseudomonas fluorescens
Also see hits to annotated proteins above

47% id,
97% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory