Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1375: Ornithine decarboxylase (RefSeq)
is similar to:
PaperBLAST

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

33% id,
82% cov

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca

29% id,
93% cov

ODC_NICGU / Q9FPK5: Ornithine decarboxylase, chloroplastic; Lysine decarboxylase; EC 4.1.1.17; EC 4.1.1.18 from Nicotiana glutinosa
Q9FPK5: ornithine decarboxylase (EC 4.1.1.17) from Nicotiana glutinosa

30% id,
90% cov

More...

Dshi_3059: diaminopimelate decarboxylase (RefSeq)
is similar to:
PaperBLAST

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

26% id,
88% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1428438-1429853 (frame +3) on 57145
is similar to:
PaperBLAST

ODC_NICGL / E0WN94: Ornithine decarboxylase, chloroplastic; EC 4.1.1.17 from Nicotiana glauca
Also see hits to annotated proteins above

30% id,
92% cov

ODC1B_TOBAC / P93351: Ornithine decarboxylase 1B, chloroplastic; Nt-ODC; EC 4.1.1.17 from Nicotiana tabacum
Also see hits to annotated proteins above

29% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory