Searching in Dinoroseobacter shibae DFL-12 (Dino)
Found 56 curated entries in PaperBLAST's database that match '4.1.1.19' as complete word(s).
These curated entries have 40 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query
Dshi_1375: Ornithine decarboxylase (RefSeq) is similar to: | PaperBLAST |
ADC / Q96A70: arginine decarboxylase (EC 4.1.1.19) from Homo sapiens | 29% id, 55% cov |
MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea | 25% id, 38% cov |
Dshi_3059: diaminopimelate decarboxylase (RefSeq) is similar to: | PaperBLAST |
speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa | 26% id, 45% cov |
Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri | 26% id, 44% cov |
SPEA_ECOLI / P21170: Biosynthetic arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli | 24% id, 47% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
3228637-3230007 (frame -3) on 57145 is similar to: | PaperBLAST |
Pf1N1B4_1296: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas fluorescens | 25% id, 51% cov |
Lawrence Berkeley National Laboratory