Curated BLAST
Searching in Dinoroseobacter shibae DFL-12 (Dino)
Found 26 curated entries in PaperBLAST's database that match '4.1.1.20' as complete word(s).
These curated entries have 16 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query
Dshi_3059: diaminopimelate decarboxylase (RefSeq)
is similar to: | PaperBLAST |
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis | 51% id,
100% cov |
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae | 50% id,
100% cov |
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori | 42% id,
94% cov |
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori | 42% id,
94% cov |
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron | 41% id,
94% cov |
DCDA_THEMA / Q9X1K5: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima | 37% id,
98% cov |
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii | 36% id,
97% cov |
DCDA_STAAC / Q5HG20: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Staphylococcus aureus | 33% id,
98% cov |
lysA / P23630: diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis | 33% id,
95% cov |
DCDA_ECOLI / P00861: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli
DCDA_ECOLW / E0IWI3: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli
LysA / b2838: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
lysA / P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
P00861: diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli | 33% id,
93% cov |
Echvi_1295: diaminopimelate decarboxylase (EC 4.1.1.20) from Echinicola vietnamensis | 32% id,
97% cov |
DCDA_CORGL / P09890: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Corynebacterium glutamicum
P09890: diaminopimelate decarboxylase (EC 4.1.1.20) from Corynebacterium glutamicum | 31% id,
95% cov |
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana
AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana
Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana | 35% id,
83% cov |
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana
AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana
Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana | 34% id,
83% cov |
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica | 32% id,
42% cov |
More... |
Dshi_1375: Ornithine decarboxylase (RefSeq)
is similar to: | PaperBLAST |
DCDA_HELPX / B4XMC6: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori | 33% id,
83% cov |
P56129: diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori | 32% id,
83% cov |
Ga0059261_2051: diaminopimelate decarboxylase (EC 4.1.1.20) from Sphingomonas koreensis | 31% id,
84% cov |
BT1374: diaminopimelate decarboxylase (EC 4.1.1.20) from Bacteroides thetaiotaomicron | 29% id,
87% cov |
Q9KVL7: diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae | 27% id,
88% cov |
DCDA_METJA / Q58497: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii | 26% id,
87% cov |
DCDA_MYCTU / P9WIU7: Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis
P9WIU7: diaminopimelate decarboxylase (EC 4.1.1.20) from Mycobacterium tuberculosis | 26% id,
85% cov |
DCDA2_ARATH / Q94A94: Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana
AT5G11880 / Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana
Q94A94: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana | 26% id,
74% cov |
DCDA1_ARATH / Q949X7: Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana
AT3G14390 / Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana
Q949X7: diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana | 26% id,
75% cov |
N515DRAFT_4002: aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) from Dyella japonica | 33% id,
38% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins.
These remaining reading frames may be pseudogenes, omissions in the genome annotation,
or N-terminal extensions of annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory