Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 6 curated entries in PaperBLAST's database that match '4.1.1.44' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_3478: 4-carboxymuconolactone decarboxylase (RefSeq)
is similar to:
PaperBLAST

Q6SJA7: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Sulfitobacter sp.

85% id,
98% cov

Q6SJB9: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Ruegeria pomeroyi

75% id,
99% cov

Q6SJC5: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Roseovarius nubinhibens

78% id,
91% cov

More...

Dshi_1007: 3-oxoadipate enol-lactonase (RefSeq)
is similar to:
PaperBLAST

Q0SH24: 3-oxoadipate enol-lactonase (EC 3.1.1.24); 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Rhodococcus jostii

39% id,
64% cov

Dshi_1323: Carboxymuconolactone decarboxylase (RefSeq)
is similar to:
PaperBLAST

Q9L5B1: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Sagittula stellata

28% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory