Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 105 curated entries in PaperBLAST's database that match '4.1.2.13' as complete word(s).

These curated entries have 81 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2156: Fructose-bisphosphate aldolase (RefSeq)
is similar to:
PaperBLAST

fbaB / P74309: class I fructose-bisphosphate aldolase/sedoheptulose-1,7-bisphosphate aldolase monomer (EC 4.1.2.13) from Synechocystis sp.

58% id,
96% cov

Q8I8I2: fructose-bisphosphate aldolase (EC 4.1.2.13) from Toxoplasma gondii

27% id,
72% cov

B9PW35: fructose-bisphosphate aldolase (EC 4.1.2.13) from Toxoplasma gondii
A0A125YGE6: fructose-bisphosphate aldolase (EC 4.1.2.13) from Toxoplasma gondii

27% id,
60% cov

Dshi_1266: ketose-bisphosphate aldolase (RefSeq)
is similar to:
PaperBLAST

ALF_BACSU / P13243: Probable fructose-bisphosphate aldolase; FBP aldolase; FBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 from Bacillus subtilis

39% id,
90% cov

I3EBM6: fructose-bisphosphate aldolase (EC 4.1.2.13) from Bacillus methanolicus

37% id,
90% cov

ALF_STRR6 / P0A4S2: Fructose-bisphosphate aldolase; FBP aldolase; FBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 from Streptococcus pneumoniae

35% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2285216-2286172 (frame +2) on 57145
is similar to:
PaperBLAST

fbaB / P74309: class I fructose-bisphosphate aldolase/sedoheptulose-1,7-bisphosphate aldolase monomer (EC 4.1.2.13) from Synechocystis sp.
Also see hits to annotated proteins above

57% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory