Searching in Dinoroseobacter shibae DFL-12 (Dino)
Found 90 curated entries in PaperBLAST's database that match '4.1.2.4'.
These curated entries have 57 distinct sequences.
Running ublast with E ≤ 0.01
Found 11 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query
| Dshi_3016: deoxyribose-phosphate aldolase (RefSeq) is similar to: | PaperBLAST |
DEOC_HUMAN / Q9Y315: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Homo sapiens | 61% id, 97% cov |
Q7WT44: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Klebsiella pneumoniae | 40% id, 95% cov |
DEOC_ECOLI / P0A6L0: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Escherichia coli | 40% id, 93% cov |
| Dshi_0821: Glycine hydroxymethyltransferase (RefSeq) is similar to: | PaperBLAST |
P0A825: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli | 59% id, 98% cov |
GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus | 59% id, 96% cov |
GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii | 38% id, 86% cov |
| Dshi_2113: Glycine hydroxymethyltransferase (RefSeq) is similar to: | PaperBLAST |
P0A825: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli | 57% id, 100% cov |
GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus | 59% id, 95% cov |
GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii | 39% id, 89% cov |
| Dshi_2144: Threonine aldolase (RefSeq) is similar to: | PaperBLAST |
LTAA_AERJA / O07051: L-allo-threonine aldolase; L-allo-TA; L-allo-threonine acetaldehyde-lyase; EC 4.1.2.49 from Aeromonas jandaei | 49% id, 98% cov |
LTAE_ECOLI / P75823: Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Escherichia coli | 46% id, 99% cov |
THA2_ARATH / Q9FPH3: Probable low-specificity L-threonine aldolase 2; Threonine aldolase 2; EC 4.1.2.48 from Arabidopsis thaliana | 42% id, 96% cov |
| Dshi_0889: alanine racemase domain protein (RefSeq) is similar to: | PaperBLAST |
A0A0J9X243: D-threonine aldolase (EC 4.1.2.42) from Achromobacter xylosoxidans | 43% id, 99% cov |
DTA_ARTSP / O82872: D-threonine aldolase; EC 4.1.2.42 from Arthrobacter sp. | 43% id, 96% cov |
A0A1C9ZZ39: D-threonine aldolase (EC 4.1.2.42) from Chlamydomonas reinhardtii | 44% id, 92% cov |
| Dshi_1266: ketose-bisphosphate aldolase (RefSeq) is similar to: | PaperBLAST |
gatY / Q65EY6: D-tagatose-bisphosphate aldolase (EC 4.1.2.40) from Bacillus licheniformis | 34% id, 96% cov |
GATY_KLEOX / Q8VS16: D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Klebsiella oxytoca | 30% id, 100% cov |
KBAY_ECOLI / P0AB74: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli | 33% id, 91% cov |
| Dshi_2109: alanine racemase domain protein (RefSeq) is similar to: | PaperBLAST |
A0A1C9ZZ39: D-threonine aldolase (EC 4.1.2.42) from Chlamydomonas reinhardtii | 30% id, 82% cov |
| Dshi_2578: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (RefSeq) is similar to: | PaperBLAST |
C7E719: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Paenibacillus sp. | 29% id, 82% cov |
| Dshi_0149: dihydrodipicolinate synthase (RefSeq) is similar to: | PaperBLAST |
NSAE_SPHXE / Q9X9Q6: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Sphingobium xenophagum | 28% id, 77% cov |
NAHE1_PSEPU / Q51947: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Pseudomonas putida | 27% id, 75% cov |
nahE / P0A144: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida | 27% id, 74% cov |
| Dshi_3006: Ribulose-phosphate 3-epimerase (RefSeq) is similar to: | PaperBLAST |
HPS_MYCGS / Q9LBW4: 3-hexulose-6-phosphate synthase; HPS; D-arabino-3-hexulose-6-phosphate formaldehyde lyase; EC 4.1.2.43 from Mycobacterium gastri | 31% id, 65% cov |
| Dshi_0552: sugar isomerase (SIS) (RefSeq) is similar to: | PaperBLAST |
hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis | 31% id, 46% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 539217-539837 (frame +3) on 57145 is similar to: | PaperBLAST |
hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis | 29% id, 54% cov |
Lawrence Berkeley National Laboratory