Curated BLAST
Searching in Dinoroseobacter shibae DFL-12 (Dino)
Found 31 curated entries in PaperBLAST's database that match '4.1.3.30'.
These curated entries have 26 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query
Dshi_0689: isocitrate lyase family protein (RefSeq)
is similar to: | PaperBLAST |
P54528: Methylisocitrate lyase (EC 4.1.3.30) from Bacillus subtilis | 44% id,
83% cov |
PRPB_SHEON / Q8EJW1: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Shewanella oneidensis | 40% id,
87% cov |
PRPB_ECOLI / P77541: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Escherichia coli
YahQ / b0331: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli
prpB / P77541: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli | 40% id,
86% cov |
PRPB_SALTY / Q56062: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Salmonella typhimurium
prpB / Q56062: 2-methylisocitrate lyase subunit (EC 4.1.3.30) from Salmonella typhimurium | 42% id,
83% cov |
RR42_RS11260: Methylisocitrate lyase (EC 4.1.3.30) from Cupriavidus basilensis | 38% id,
90% cov |
PRPB1_CORGL / Q8NSH8: Probable 2-methylisocitrate lyase 1; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum | 42% id,
82% cov |
PRPB_CUPNE / Q937P0: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Cupriavidus necator | 38% id,
90% cov |
prpB / Q0KAG5: 2-methylcitrate lyase (EC 4.1.3.30) from Cupriavidus necator | 38% id,
90% cov |
Pf6N2E2_6061: Methylisocitrate lyase (EC 4.1.3.30) from Pseudomonas fluorescens | 39% id,
86% cov |
PRPB2_CORGL / Q8NSL2: Probable 2-methylisocitrate lyase 2; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum | 41% id,
81% cov |
Q2L8W6: Methylisocitrate lyase (EC 4.1.3.30) from Toxoplasma gondii | 41% id,
73% cov |
More... |
Dshi_1092: carboxyvinyl-carboxyphosphonatephosphorylmutase (RefSeq)
is similar to: | PaperBLAST |
prpB / Q0KAG5: 2-methylcitrate lyase (EC 4.1.3.30) from Cupriavidus necator | 37% id,
96% cov |
PRPB_SALTY / Q56062: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Salmonella typhimurium
prpB / Q56062: 2-methylisocitrate lyase subunit (EC 4.1.3.30) from Salmonella typhimurium | 38% id,
95% cov |
PRPB_CUPNE / Q937P0: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Cupriavidus necator | 37% id,
96% cov |
Pf6N2E2_6061: Methylisocitrate lyase (EC 4.1.3.30) from Pseudomonas fluorescens | 38% id,
91% cov |
RR42_RS11260: Methylisocitrate lyase (EC 4.1.3.30) from Cupriavidus basilensis | 38% id,
92% cov |
PRPB_ECOLI / P77541: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Escherichia coli
YahQ / b0331: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli
prpB / P77541: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli | 36% id,
95% cov |
PRPB_SHEON / Q8EJW1: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Shewanella oneidensis | 36% id,
95% cov |
PRPB2_CORGL / Q8NSL2: Probable 2-methylisocitrate lyase 2; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum | 37% id,
86% cov |
P54528: Methylisocitrate lyase (EC 4.1.3.30) from Bacillus subtilis | 33% id,
94% cov |
PRPB1_CORGL / Q8NSH8: Probable 2-methylisocitrate lyase 1; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum | 34% id,
87% cov |
Q2L8W6: Methylisocitrate lyase (EC 4.1.3.30) from Toxoplasma gondii | 35% id,
78% cov |
ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis
ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis | 28% id,
56% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory