Searching in Dinoroseobacter shibae DFL-12 (Dino)
Found 59 curated entries in PaperBLAST's database that match '4.1.3.4'.
These curated entries have 34 distinct sequences.
Running ublast with E ≤ 0.01
Found 10 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query
| Dshi_0889: alanine racemase domain protein (RefSeq) is similar to: | PaperBLAST |
BHCC_PARDP / A1B8Z1: 3-hydroxy-D-aspartate aldolase; beta-hydroxyaspartate aldolase; EC 4.1.3.41 from Paracoccus denitrificans | 77% id, 100% cov |
BHCC_PARDE / Q8GRC8: 3-hydroxy-D-aspartate aldolase; D-3-hydroxyaspartate aldolase; D-HAA; EC 4.1.3.41 from Paracoccus denitrificans | 73% id, 50% cov |
BHCC_PARDE / Q8GRC8: 3-hydroxy-D-aspartate aldolase; D-3-hydroxyaspartate aldolase; D-HAA; EC 4.1.3.41 from Paracoccus denitrificans | 82% id, 42% cov |
| Dshi_1303: Hydroxymethylglutaryl-CoA lyase (RefSeq) is similar to: | PaperBLAST |
SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti | 65% id, 96% cov |
LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC 4.1.3.26; EC 4.1.3.4 from Pseudomonas aeruginosa | 58% id, 94% cov |
mvaB / GB|AAA25895.1: hydroxymethylglutaryl-CoA lyase; EC 4.1.3.4 from Pseudomonas mevalonii | 55% id, 95% cov |
| Dshi_1768: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (RefSeq) is similar to: | PaperBLAST |
Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli | 51% id, 96% cov |
| Dshi_2874: Citrate (pro-3S)-lyase (RefSeq) is similar to: | PaperBLAST |
A0A172MLA1: (S)-citramalyl-CoA lyase (EC 4.1.3.25); (R)-citramalyl-CoA lyase (EC 4.1.3.46) from Aspergillus terreus | 32% id, 92% cov |
| Dshi_2490: Citryl-CoA lyase (RefSeq) is similar to: | PaperBLAST |
A0A172MLA1: (S)-citramalyl-CoA lyase (EC 4.1.3.25); (R)-citramalyl-CoA lyase (EC 4.1.3.46) from Aspergillus terreus | 30% id, 93% cov |
| Dshi_2109: alanine racemase domain protein (RefSeq) is similar to: | PaperBLAST |
BHCC_PARDP / A1B8Z1: 3-hydroxy-D-aspartate aldolase; beta-hydroxyaspartate aldolase; EC 4.1.3.41 from Paracoccus denitrificans | 28% id, 92% cov |
BHCC_PARDE / Q8GRC8: 3-hydroxy-D-aspartate aldolase; D-3-hydroxyaspartate aldolase; D-HAA; EC 4.1.3.41 from Paracoccus denitrificans | 27% id, 92% cov |
| Dshi_1696: 2-isopropylmalate synthase/homocitrate synthase family protein (RefSeq) is similar to: | PaperBLAST |
HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus | 26% id, 97% cov |
HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.43; EC 4.1.3.39 from Mycobacterium tuberculosis | 28% id, 88% cov |
hsaF / Q0S815: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Rhodococcus jostii | 25% id, 79% cov |
| Dshi_1241: KDPG and KHG aldolase (RefSeq) is similar to: | PaperBLAST |
Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli | 29% id, 84% cov |
| Dshi_0596: 2-isopropylmalate synthase (RefSeq) is similar to: | PaperBLAST |
HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.43; EC 4.1.3.39 from Mycobacterium tuberculosis | 27% id, 56% cov |
HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus | 26% id, 57% cov |
hsaF / Q0S815: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Rhodococcus jostii | 26% id, 57% cov |
| Dshi_1304: Enoyl-CoA hydratase/isomerase (RefSeq) is similar to: | PaperBLAST |
hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans | 31% id, 43% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 10 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 1357963-1358829 (frame +1) on 57145 is similar to: | PaperBLAST |
SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti | 64% id, 98% cov |
| 587096-588721 (frame -2) on 57145 is similar to: | PaperBLAST |
HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans | 28% id, 76% cov |
tesG / Q83VZ3: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Comamonas testosteroni | 25% id, 78% cov |
Lawrence Berkeley National Laboratory