Searching in Dinoroseobacter shibae DFL-12 (Dino)
Found 17 curated entries in PaperBLAST's database that match '4.1.3.4' as complete word(s).
These curated entries have 12 distinct sequences.
Running ublast with E ≤ 0.01
Found 3 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query
| Dshi_1303: Hydroxymethylglutaryl-CoA lyase (RefSeq) is similar to: | PaperBLAST |
SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti | 65% id, 96% cov |
LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC 4.1.3.26; EC 4.1.3.4 from Pseudomonas aeruginosa | 58% id, 94% cov |
mvaB / GB|AAA25895.1: hydroxymethylglutaryl-CoA lyase; EC 4.1.3.4 from Pseudomonas mevalonii | 55% id, 95% cov |
| Dshi_1304: Enoyl-CoA hydratase/isomerase (RefSeq) is similar to: | PaperBLAST |
hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans | 31% id, 43% cov |
| Dshi_1696: 2-isopropylmalate synthase/homocitrate synthase family protein (RefSeq) is similar to: | PaperBLAST |
HMGCL_ARATH / O81027: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Arabidopsis thaliana | 23% id, 48% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 1357963-1358829 (frame +1) on 57145 is similar to: | PaperBLAST |
SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti | 64% id, 98% cov |
Lawrence Berkeley National Laboratory