Curated BLAST for Genomes


Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 17 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1303: Hydroxymethylglutaryl-CoA lyase (RefSeq)
is similar to:

SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC from Sinorhizobium meliloti

65% id,
96% cov

LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC; EC from Pseudomonas aeruginosa
liuE / Q9I2A0: hydroxymethylglutaryl-CoA lyase subunit (EC; EC from Pseudomonas aeruginosa

58% id,
94% cov

mvaB / GB|AAA25895.1: hydroxymethylglutaryl-CoA lyase; EC from Pseudomonas mevalonii
mvaB / P13703: hydroxymethylglutaryl-CoA lyase monomer (EC from Pseudomonas mevalonii

55% id,
95% cov


Dshi_1304: Enoyl-CoA hydratase/isomerase (RefSeq)
is similar to:

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC; EC from Emericella nidulans

31% id,
43% cov

Dshi_1696: 2-isopropylmalate synthase/homocitrate synthase family protein (RefSeq)
is similar to:

HMGCL_ARATH / O81027: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC from Arabidopsis thaliana

23% id,
48% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1357963-1358829 (frame +1) on 57145
is similar to:

SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC from Sinorhizobium meliloti
Also see hits to annotated proteins above

64% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory