Curated BLAST for Genomes


Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 6 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2447: Mandelate racemase/muconate lactonizing protein (RefSeq)
is similar to:

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC; EC; EC from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC from Saccharolobus solfataricus

31% id,
86% cov

YidU / b4478: D-galactonate dehydratase (EC; EC from Escherichia coli
dgoD / Q6BF17: D-galactonate dehydratase (EC from Escherichia coli

28% id,
91% cov

GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC; EC; EC from Picrophilus torridus
Q6L1T2: gluconate/galactonate dehydratase (EC; gluconate dehydratase (EC from Picrophilus torridus

27% id,
86% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory