Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 65 curated entries in PaperBLAST's database that match '4.2.1.3' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2060: aconitate hydratase 2 (RefSeq)
is similar to:
PaperBLAST

Dshi_2060: Aconitate hydratase (EC 4.2.1.3) from Dinoroseobacter shibae

100% id,
100% cov

ACNB_ECOLI / P36683: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Escherichia coli
acnB / GB|AAZ86920.1: aconitate hydratas; EC 4.2.1.3 from Escherichia coli
P36683: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

31% id,
63% cov

A0A2X5AHR8: aconitate hydratase (EC 4.2.1.3) from Helicobacter pylori

31% id,
64% cov

More...

Dshi_1851: aconitate hydratase 1 (RefSeq)
is similar to:
PaperBLAST

HP15_3433: Aconitate hydratase (EC 4.2.1.3) from Marinobacter adhaerens

61% id,
99% cov

ACNA_BRADU / P70920: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Bradyrhizobium diazoefficiens

61% id,
99% cov

ACON_LEGPH / P37032: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; IP210; Iron-responsive protein-like; IRP-like; Major iron-containing protein; MICP; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Legionella pneumophila

60% id,
100% cov

More...

Dshi_0085: 3-isopropylmalate dehydratase, large subunit (RefSeq)
is similar to:
PaperBLAST

ACO1_ARATH / Q42560: Aconitate hydratase 1; Aconitase 1; Citrate hydro-lyase 1; EC 4.2.1.3 from Arabidopsis thaliana

27% id,
49% cov

D3GQL1: aconitate hydratase (EC 4.2.1.3) from Citrus clementina

26% id,
49% cov

ACNA_ECOLI / P25516: Aconitate hydratase A; ACN; Aconitase; Iron-responsive protein-like; IRP-like; RNA-binding protein; Stationary phase enzyme; EC 4.2.1.3 from Escherichia coli
acnA: aconitate hydratase 1; EC 4.2.1.3 from Escherichia coli
P25516: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

25% id,
51% cov

More...

Dshi_0695: 3-isopropylmalate dehydratase, large subunit (RefSeq)
is similar to:
PaperBLAST

Q9NFX3: aconitate hydratase (EC 4.2.1.3) from Drosophila melanogaster

29% id,
20% cov

Dshi_0083: 3-isopropylmalate dehydratase, small subunit (RefSeq)
is similar to:
PaperBLAST

ACON_PIG / P16276: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Sus scrofa

28% id,
17% cov

ACON_RAT / Q9ER34: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Rattus norvegicus
Q9ER34: aconitate hydratase (EC 4.2.1.3) from Rattus norvegicus

31% id,
16% cov

Q99KI0: aconitate hydratase (EC 4.2.1.3) from Mus musculus

31% id,
16% cov

More...

Dshi_0696: 3-isopropylmalate dehydratase, small subunit (RefSeq)
is similar to:
PaperBLAST

ACOHC_MOUSE / P28271: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Iron regulatory protein 1; IRP1; Iron-responsive element-binding protein 1; IRE-BP 1; EC 4.2.1.3 from Mus musculus
P28271: aconitate hydratase (EC 4.2.1.3) from Mus musculus

32% id,
14% cov

ACOHC_BOVIN / Q0VCU1: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Iron-responsive element-binding protein 1; IRE-BP 1; EC 4.2.1.3 from Bos taurus

32% id,
14% cov

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis

26% id,
16% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory