Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 3 curated entries in PaperBLAST's database that match '4.2.1.34'.

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1426: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (RefSeq)
is similar to:
PaperBLAST

Q141Z6: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Paraburkholderia xenovorans

59% id,
97% cov

P0AC33: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Escherichia coli

31% id,
91% cov

P14407: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Escherichia coli

30% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1479773-1481344 (frame +2) on 57145
is similar to:
PaperBLAST

Q141Z6: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Paraburkholderia xenovorans
Also see hits to annotated proteins above

58% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory