Searching in Dinoroseobacter shibae DFL-12 (Dino)
Found 3 curated entries in PaperBLAST's database that match '4.2.1.34'.
These curated entries have 3 distinct sequences.
Running ublast with E ≤ 0.01
Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query
Dshi_1426: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (RefSeq) is similar to: | PaperBLAST |
Q141Z6: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Paraburkholderia xenovorans | 59% id, 97% cov |
P0AC33: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Escherichia coli | 31% id, 91% cov |
P14407: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Escherichia coli | 30% id, 91% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
1479773-1481344 (frame +2) on 57145 is similar to: | PaperBLAST |
Q141Z6: fumarate hydratase (EC 4.2.1.2); (S)-2-methylmalate dehydratase (EC 4.2.1.34) from Paraburkholderia xenovorans | 58% id, 98% cov |
Lawrence Berkeley National Laboratory