Curated BLAST for Genomes


Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 12 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2446: dihydrodipicolinate synthetase (RefSeq)
is similar to:

Ac3H11_603: L-2-keto-3-deoxyarabonate dehydratase (EC from Acidovorax sp.

59% id,
100% cov

KDADA_AZOBR / Q1JUQ0: L-2-keto-3-deoxyarabonate dehydratase; L-KDA dehydratase; 2-dehydro-3-deoxy-L-arabinonate dehydratase; L-2-keto-3-deoxyarabinonate dehydratase; EC from Azospirillum brasilense
Q1JUQ0: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC from Azospirillum brasilense

57% id,
97% cov

HSERO_RS06870: L-2-keto-3-deoxyarabonate dehydratase (EC from Herbaspirillum seropedicae

54% id,
100% cov


Dshi_2542: 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (RefSeq)
is similar to:

xacE / D4GP28: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC; EC from Haloferax volcanii

23% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory