Curated BLAST for Genomes


Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 10 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1271: Xylose isomerase domain protein TIM barrel (RefSeq)
is similar to:

PGA1_c07270: Myo-inosose-2 dehydratase (EC from Phaeobacter inhibens

80% id,
100% cov

BPHYT_RS13920: Myo-inosose-2 dehydratase (EC from Burkholderia phytofirmans

29% id,
94% cov

Pf6N2E2_513: Myo-inosose-2 dehydratase (EC from Pseudomonas fluorescens

30% id,
91% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory