Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 33 curated entries in PaperBLAST's database that match '4.2.1.51' as complete word(s).

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_0653: Prephenate dehydratase (RefSeq)
is similar to:
PaperBLAST

Q5NLV8: prephenate dehydratase (EC 4.2.1.51) from Zymomonas mobilis

48% id,
83% cov

BT3936: prephenate and/or arogenate dehydratase (EC 4.2.1.51) from Bacteroides thetaiotaomicron

33% id,
97% cov

Q8DUV6: prephenate dehydratase (EC 4.2.1.51) from Streptococcus mutans

30% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

655254-657182 (frame -1) on 57145
is similar to:
PaperBLAST

Q5NLV8: prephenate dehydratase (EC 4.2.1.51) from Zymomonas mobilis
Also see hits to annotated proteins above

46% id,
89% cov

Q6Z3Y3: prephenate dehydratase (EC 4.2.1.51) from Oryza sativa
Also see hits to annotated proteins above

34% id,
92% cov

A0A1I9WKA1: prephenate dehydratase (EC 4.2.1.51) from Pinus pinaster
Also see hits to annotated proteins above

34% id,
90% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory