Curated BLAST for Genomes


Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 7 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2038: Altronate dehydratase (RefSeq)
is similar to:

BPHYT_RS34230: L-fuconate dehydratase; L-rhamnonate dehydratase (EC; EC from Burkholderia phytofirmans

35% id,
74% cov

Dshi_2037: hypothetical protein (RefSeq)
is similar to:

BPHYT_RS34235: putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC; EC from Burkholderia phytofirmans

32% id,
75% cov

Dshi_2447: Mandelate racemase/muconate lactonizing protein (RefSeq)
is similar to:

G3Y683: L-fuconate dehydratase (EC from Aspergillus niger

26% id,
82% cov

ENOF1_HUMAN / Q7L5Y1: Mitochondrial enolase superfamily member 1; Antisense RNA to thymidylate synthase; rTS; L-fuconate dehydratase; EC from Homo sapiens

25% id,
79% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory