Curated BLAST for Genomes


Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 20 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_0653: Prephenate dehydratase (RefSeq)
is similar to:

AROD1_ARATH / Q9SA96: Arogenate dehydratase/prephenate dehydratase 1, chloroplastic; AtADT1; AtPDT1; EC; EC from Arabidopsis thaliana
Q9SA96: arogenate dehydratase (EC from Arabidopsis thaliana

39% id,
72% cov

AROD2_ARATH / Q9SSE7: Arogenate dehydratase/prephenate dehydratase 2, chloroplastic; AtADT2; AtPDT2; EC; EC from Arabidopsis thaliana
Q9SSE7: arogenate dehydratase (EC from Arabidopsis thaliana

37% id,
73% cov

AROD2_PETHY / D3U716: Arogenate dehydratase 2; PhADT2; Prephenate dehydratase ADT3; EC; EC from Petunia hybrida
D3U716: arogenate dehydratase (EC from Petunia x

36% id,
72% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory