Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 110 curated entries in PaperBLAST's database that match '4.3.1.1'.

These curated entries have 73 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2310: Ornithine cyclodeaminase (RefSeq)
is similar to:
PaperBLAST

OCD_AGRFC / P09773: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium fabrum
arcB / P09773: ornithine cyclodeaminase (EC 4.3.1.12) from Agrobacterium fabrum

66% id,
98% cov

OCD_AGRT4 / Q59701: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium tumefaciens

65% id,
98% cov

OCD_PSEPK / Q88H32: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Pseudomonas putida
Q88H32: ornithine cyclodeaminase (EC 4.3.1.12) from Pseudomonas putida

54% id,
95% cov

More...

Dshi_5008: L-serine dehydratase (NCBI)
is similar to:
PaperBLAST

Pf1N1B4_1013: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

51% id,
100% cov

Ac3H11_929: L-serine ammonia-lyase (EC 4.3.1.17) from Acidovorax sp.

51% id,
100% cov

Pf6N2E2_5557: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

51% id,
100% cov

More...

Dshi_3473: threonine dehydratase (RefSeq)
is similar to:
PaperBLAST

CA265_RS15860: threonine deaminase (EC 4.3.1.19) from Pedobacter sp.

50% id,
97% cov

A0QX60: threonine ammonia-lyase (EC 4.3.1.19) from Mycolicibacterium smegmatis

46% id,
91% cov

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

43% id,
93% cov

More...

Dshi_0888: Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq)
is similar to:
PaperBLAST

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

47% id,
99% cov

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Arabidopsis thaliana

49% id,
94% cov

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 4.3.1.17; EC 4.3.1.18; EC 5.1.1.18 from Schizosaccharomyces pombe

46% id,
97% cov

More...

Dshi_2334: fumarate hydratase, class II (RefSeq)
is similar to:
PaperBLAST

Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

43% id,
98% cov

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

42% id,
98% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

41% id,
99% cov

More...

Dshi_2702: Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq)
is similar to:
PaperBLAST

LTHAD_PSESP / A4F2N8: L-threo-3-hydroxyaspartate ammonia-lyase; L-threo-3-hydroxyaspartate dehydratase; L-THA DH; EC 4.3.1.16 from Pseudomonas sp.
thadh / A4F2N8: L-threo-3-hydroxy aspartate ammonia-lyase (EC 4.3.1.16) from Pseudomonas sp.
A4F2N8: threo-3-hydroxy-L-aspartate ammonia-lyase (EC 4.3.1.16) from Pseudomonas sp.

43% id,
97% cov

L0N5C4: threo-3-hydroxy-L-aspartate ammonia-lyase (EC 4.3.1.16) from Pseudomonas sp.

40% id,
98% cov

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

40% id,
98% cov

More...

Dshi_1439: pyridoxal phosphate-dependent enzyme, D-cysteine desulfhydrase family (RefSeq)
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

37% id,
97% cov

Dshi_2109: alanine racemase domain protein (RefSeq)
is similar to:
PaperBLAST

DSD1_CHICK / A0A8V1ABE9: D-serine dehydratase; EC 4.3.1.18 from Gallus gallus

36% id,
98% cov

Dshi_0890: Ornithine cyclodeaminase (RefSeq)
is similar to:
PaperBLAST

OCD_PSEPK / Q88H32: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Pseudomonas putida
Q88H32: ornithine cyclodeaminase (EC 4.3.1.12) from Pseudomonas putida

31% id,
71% cov

OCD_AGRFC / P09773: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium fabrum
arcB / P09773: ornithine cyclodeaminase (EC 4.3.1.12) from Agrobacterium fabrum

27% id,
73% cov

OCD_AGRT4 / Q59701: Ornithine cyclodeaminase; OCD; EC 4.3.1.12 from Agrobacterium tumefaciens

28% id,
68% cov

Dshi_1031: tryptophan synthase, beta subunit (RefSeq)
is similar to:
PaperBLAST

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

26% id,
69% cov

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

28% id,
43% cov

Dshi_2314: Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq)
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

26% id,
61% cov

PfGW456L13_3648: D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens

26% id,
22% cov

Q4A041: D-Serine ammonia-lyase (EC 4.3.1.18) from Staphylococcus saprophyticus

24% id,
16% cov

More...

Dshi_1842: adenylosuccinate lyase (RefSeq)
is similar to:
PaperBLAST

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

24% id,
64% cov

ASPA_ECOLI / P0AC38: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Escherichia coli
AspA / b4139: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
aspA / P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli

24% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory