Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 40 curated entries in PaperBLAST's database that match '4.3.3.7' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_0149: dihydrodipicolinate synthase (RefSeq)
is similar to:
PaperBLAST

DAPA_AGRFC / Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Agrobacterium fabrum
Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

66% id,
100% cov

DAPA_RHIML / Q07607: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; Protein MosA; EC 4.3.3.7 from Rhizobium meliloti
Q07607: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Sinorhizobium meliloti

62% id,
100% cov

Q6G468: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bartonella henselae

57% id,
99% cov

More...

Dshi_2446: dihydrodipicolinate synthetase (RefSeq)
is similar to:
PaperBLAST

Q7D313: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

30% id,
96% cov

DAPA_AGRFC / Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Agrobacterium fabrum
Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

27% id,
98% cov

DAPA_NEIMB / Q9JZR4: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Neisseria meningitidis
Q9JZR4: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Neisseria meningitidis

26% id,
95% cov

More...

Dshi_3040: Dihydrodipicolinate reductase (RefSeq)
is similar to:
PaperBLAST

Q3MFY8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Trichormus variabilis

30% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory