Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 38 curated entries in PaperBLAST's database that match '4.4.1.5' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2070: Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq)
is similar to:
PaperBLAST

P0A0T3: lactoylglutathione lyase (EC 4.4.1.5) from Neisseria meningitidis

41% id,
93% cov

Q9HY85: lactoylglutathione lyase (EC 4.4.1.5) from Pseudomonas aeruginosa

36% id,
99% cov

GLX1_ARATH / O65398: Lactoylglutathione lyase GLX1; Glyoxalase I; AtGLX1; GlyI; EC 4.4.1.5 from Arabidopsis thaliana

33% id,
45% cov

Dshi_0767: Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq)
is similar to:
PaperBLAST

P0A0T3: lactoylglutathione lyase (EC 4.4.1.5) from Neisseria meningitidis

39% id,
94% cov

Q9I5L8: lactoylglutathione lyase (EC 4.4.1.5) from Pseudomonas aeruginosa

38% id,
97% cov

Q2PYM9: lactoylglutathione lyase (EC 4.4.1.5) from Leishmania infantum

38% id,
94% cov

More...

Dshi_2630: Methylmalonyl-CoA epimerase (RefSeq)
is similar to:
PaperBLAST

Q97H22: lactoylglutathione lyase (EC 4.4.1.5) from Clostridium acetobutylicum

29% id,
97% cov

Dshi_0637: Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq)
is similar to:
PaperBLAST

Q9CJC0: lactoylglutathione lyase (EC 4.4.1.5) from Lactococcus lactis

30% id,
88% cov

Dshi_0124: intracellular protease, PfpI family (RefSeq)
is similar to:
PaperBLAST

DJ1D_ARATH / Q9M8R4: Protein DJ-1 homolog D; AtDJ1D; Lactoylglutathione lyase DJ1D; EC 4.4.1.5 from Arabidopsis thaliana

29% id,
48% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

774601-775038 (frame -3) on 57145
is similar to:
PaperBLAST

Q2PYM9: lactoylglutathione lyase (EC 4.4.1.5) from Leishmania infantum
Also see hits to annotated proteins above

38% id,
97% cov

636477-637613 (frame -1) on 57145
is similar to:
PaperBLAST

Q9CJC0: lactoylglutathione lyase (EC 4.4.1.5) from Lactococcus lactis
Also see hits to annotated proteins above

30% id,
90% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory