Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 5 curated entries in PaperBLAST's database that match '5.1.1.12' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2298: alanine racemase domain protein (RefSeq)
is similar to:
PaperBLAST

LYSRA_THEMA / Q9X1T3: Lysine racemase; Lys racemase; Ornithine racemase; EC 5.1.1.5; EC 5.1.1.12 from Thermotoga maritima

36% id,
99% cov

ORR_ACESD / C1FW08: Ornithine racemase; OR; EC 5.1.1.12 from Acetoanaerobium sticklandii
orr / C1FW08: ornithine racemase monomer (EC 5.1.1.12) from Acetoanaerobium sticklandii

33% id,
99% cov

Q8ZNC6: ornithine racemase (EC 5.1.1.12) from Salmonella enterica

32% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory