Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 102 curated entries in PaperBLAST's database that match '5.1.3.2'.

These curated entries have 62 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_3868: UDP-glucose 4-epimerase (RefSeq)
is similar to:
PaperBLAST

galE / P55180: UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) from Bacillus subtilis

55% id,
96% cov

GALE_NEIMC / P56986: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Neisseria meningitidis

51% id,
97% cov

GALE_NEIMB / P56985: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Neisseria meningitidis

51% id,
97% cov

More...

Dshi_4115: dTDP-glucose 4,6-dehydratase (RefSeq)
is similar to:
PaperBLAST

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

35% id,
99% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

34% id,
98% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

34% id,
98% cov

More...

Dshi_4114: dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq)
is similar to:
PaperBLAST

CHMJ_STRBI / Q5SFD1: dTDP-4-dehydro-6-deoxyglucose 3-epimerase; dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase; dTDP-4-keto-6-deoxyglucose epimerase; dTDP-4-oxo-6-deoxy-D-glucose epimerase; EC 5.1.3.27 from Streptomyces bikiniensis

34% id,
82% cov

GERF_STRSQ / Q331R1: dTDP-4-dehydro-6-deoxyglucose 3-epimerase; dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase; dTDP-4-keto-6-deoxyglucose epimerase; dTDP-4-oxo-6-deoxy-D-glucose epimerase; EC 5.1.3.27 from Streptomyces sp.
gerF / Q331R1: dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase monomer (EC 5.1.3.27) from Streptomyces sp.
Q331R1: dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase (EC 5.1.3.27) from Streptomyces sp.

34% id,
82% cov

Dshi_4142: NAD-dependent epimerase/dehydratase (RefSeq)
is similar to:
PaperBLAST

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

28% id,
98% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

29% id,
95% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

26% id,
96% cov

Dshi_4139: GDP-mannose 4,6-dehydratase (RefSeq)
is similar to:
PaperBLAST

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

28% id,
97% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

27% id,
97% cov

Dshi_1958: NAD-dependent epimerase/dehydratase (RefSeq)
is similar to:
PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

27% id,
97% cov

O73960: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrococcus horikoshii

26% id,
98% cov

Dshi_3857: polysaccharide biosynthesis protein CapD (RefSeq)
is similar to:
PaperBLAST

CAPD_RICPR / Q9ZDJ5: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Rickettsia prowazekii

31% id,
79% cov

GALE_CAEEL / Q564Q1: UDP-glucose 4-epimerase; Galactowaldenase; UDP-N-acetylgalactosamine 4-epimerase; UDP-GalNAc 4-epimerase; UDP-N-acetylglucosamine 4-epimerase; UDP-GlcNAc 4-epimerase; UDP-galactose 4-epimerase; EC 5.1.3.2; EC 5.1.3.7 from Caenorhabditis elegans

23% id,
89% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

25% id,
82% cov

More...

Dshi_2430: L-rhamnose 1-epimerase (RefSeq)
is similar to:
PaperBLAST

SM_b21108: L-fucose mutarotase (EC 5.1.3.29) from Sinorhizobium meliloti

31% id,
74% cov

Dshi_2436: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase (RefSeq)
is similar to:
PaperBLAST

UGE2_ARATH / Q9T0A7: UDP-glucose 4-epimerase 2; AtUGE2; UDP-galactose 4-epimerase 2; EC 5.1.3.2 from Arabidopsis thaliana
Q9T0A7: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-arabinose 4-epimerase (EC 5.1.3.5) from Arabidopsis thaliana

26% id,
38% cov

galE / P55180: UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) from Bacillus subtilis

30% id,
32% cov

UGE3_ARATH / Q8LDN8: Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 3; UDP-D-xylose 4-epimerase; UDP-L-arabinose 4-epimerase; UDP-galactose 4-epimerase 3; UDP-glucose 4-epimerase 3; AtUGE3; EC 5.1.3.2; EC 5.1.3.5 from Arabidopsis thaliana
Q8LDN8: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-arabinose 4-epimerase (EC 5.1.3.5) from Arabidopsis thaliana

25% id,
36% cov

More...

Dshi_3590: NADH dehydrogenase (ubiquinone) (RefSeq)
is similar to:
PaperBLAST

O73960: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrococcus horikoshii

33% id,
24% cov

Dshi_1700: short-chain dehydrogenase/reductase SDR (RefSeq)
is similar to:
PaperBLAST

GALE_STRTR / P21977: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Streptococcus thermophilus
galE / P21977: UDP-glucose-4-epimerase (EC 5.1.3.2) from Streptococcus thermophilus
P21977: UDP-glucose 4-epimerase (EC 5.1.3.2) from Streptococcus thermophilus

36% id,
17% cov

Dshi_2319: Quinone oxidoreductase putative YhdH/YhfP (RefSeq)
is similar to:
PaperBLAST

UGE1_SCHPO / Q9Y7X5: UDP-glucose 4-epimerase uge1; Galactowaldenase; EC 5.1.3.2 from Schizosaccharomyces pombe
Q9Y7X5: UDP-glucose 4-epimerase (EC 5.1.3.2) from Schizosaccharomyces pombe

33% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

46401-46967 (frame +3) on 57149
is similar to:
PaperBLAST

CHMJ_STRBI / Q5SFD1: dTDP-4-dehydro-6-deoxyglucose 3-epimerase; dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase; dTDP-4-keto-6-deoxyglucose epimerase; dTDP-4-oxo-6-deoxy-D-glucose epimerase; EC 5.1.3.27 from Streptomyces bikiniensis
Also see hits to annotated proteins above

34% id,
88% cov

GERF_STRSQ / Q331R1: dTDP-4-dehydro-6-deoxyglucose 3-epimerase; dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase; dTDP-4-keto-6-deoxyglucose epimerase; dTDP-4-oxo-6-deoxy-D-glucose epimerase; EC 5.1.3.27 from Streptomyces sp.
gerF / Q331R1: dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase monomer (EC 5.1.3.27) from Streptomyces sp.
Q331R1: dTDP-4-dehydro-6-deoxy-D-glucose 3-epimerase (EC 5.1.3.27) from Streptomyces sp.
Also see hits to annotated proteins above

33% id,
88% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory