Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 168 curated entries in PaperBLAST's database that match '5.3.1.1'.

These curated entries have 116 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2437: L-rhamnose isomerase (RefSeq)
is similar to:
PaperBLAST

Dshi_2437: L-rhamnose isomerase (EC 5.3.1.14) from Dinoroseobacter shibae

100% id,
100% cov

RHAA_ECOLI / P32170: L-rhamnose isomerase; EC 5.3.1.14 from Escherichia coli
RhaA / b3903: L-rhamnose isomerase (EC 5.3.1.14) from Escherichia coli
rhaA / P32170: L-rhamnose isomerase (EC 5.3.1.14) from Escherichia coli
P32170: L-rhamnose isomerase (EC 5.3.1.14) from Escherichia coli

56% id,
99% cov

BWI76_RS00675: L-rhamnose isomerase (EC 5.3.1.14) from Klebsiella michiganensis

56% id,
99% cov

More...

Dshi_2578: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (RefSeq)
is similar to:
PaperBLAST

SMc02570: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Sinorhizobium meliloti

64% id,
98% cov

AZOBR_RS01680: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Azospirillum brasilense

63% id,
96% cov

CCNA_03852: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Caulobacter crescentus

60% id,
98% cov

More...

Dshi_2078: Triose-phosphate isomerase (RefSeq)
is similar to:
PaperBLAST

TPIS_BARHE / Q8L1Z5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bartonella henselae
Q8L1Z5: triose-phosphate isomerase (EC 5.3.1.1) from Bartonella henselae

51% id,
95% cov

TPIS_DEIRA / Q9RUP5: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Deinococcus radiodurans

46% id,
99% cov

TPIS_BACCE / Q4MQ55: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bacillus cereus

43% id,
100% cov

More...

Dshi_2025: protein of unknown function DUF1498 (RefSeq)
is similar to:
PaperBLAST

D5MTT1: D-lyxose ketol-isomerase (EC 5.3.1.15) from Serratia proteamaculans

48% id,
98% cov

Dshi_3588: KpsF/GutQ family protein (RefSeq)
is similar to:
PaperBLAST

KDSD_PSEAE / Q9HVW0: Arabinose 5-phosphate isomerase KdsD; API; Pa-KdsD; EC 5.3.1.13 from Pseudomonas aeruginosa
Q9HVW0: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Pseudomonas aeruginosa

46% id,
97% cov

KDSD_ECOLI / P45395: Arabinose 5-phosphate isomerase KdsD; API; L-API; EC 5.3.1.13 from Escherichia coli
KdsD / b3197: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli
kdsD: arabinose 5-phosphate isomerase; EC 5.3.1.13 from Escherichia coli
kdsD / P45395: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli
P45395: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Escherichia coli

46% id,
96% cov

KDSD_FRATT / Q5NGP7: Arabinose 5-phosphate isomerase KdsD; API; EC 5.3.1.13 from Francisella tularensis

42% id,
98% cov

More...

Dshi_2576: imidazoleglycerol phosphate synthase, cyclase subunit (RefSeq)
is similar to:
PaperBLAST

P10372: 1-(5-phosphoribosyl)-5-[(5 phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Salmonella enterica

31% id,
97% cov

SMc02570: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Sinorhizobium meliloti

30% id,
97% cov

Pf1N1B4_1624: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas fluorescens

31% id,
96% cov

More...

Dshi_2155: Phosphoglycerate kinase (RefSeq)
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

48% id,
60% cov

Dshi_2512: TIM-barrel protein, yjbN family (RefSeq)
is similar to:
PaperBLAST

BT1379: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Bacteroides thetaiotaomicron

25% id,
68% cov

Dshi_0446: putative signal transduction protein with CBS domains (RefSeq)
is similar to:
PaperBLAST

KDSD_PSEAE / Q9HVW0: Arabinose 5-phosphate isomerase KdsD; API; Pa-KdsD; EC 5.3.1.13 from Pseudomonas aeruginosa
Q9HVW0: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Pseudomonas aeruginosa

35% id,
31% cov

Dshi_1868: ferredoxin-dependent glutamate synthase (RefSeq)
is similar to:
PaperBLAST

Q97VM8: triose-phosphate isomerase (EC 5.3.1.1) from Saccharolobus solfataricus

37% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory