Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 23 curated entries in PaperBLAST's database that match '5.3.1.5' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1996: xylose isomerase (RefSeq) is similar to:	PaperBLAST
PGA1_c14000: Xylose isomerase (EC 5.3.1.5) from Phaeobacter inhibens	71% id, 100% cov
SMc03163: Xylose isomerase (EC 5.3.1.5) from Sinorhizobium meliloti	69% id, 100% cov
XYLA_ECOLI / P00944: Xylose isomerase; D-xylulose keto-isomerase; EC 5.3.1.5 from Escherichia coli XylA / b3565: xylose isomerase (EC 5.3.1.5) from Escherichia coli xylA / GB\|AAC76589.1: xylose isomerase; EC 5.3.1.5 from Escherichia coli xylA / P00944: xylose isomerase (EC 5.3.1.5) from Escherichia coli	60% id, 99% cov
BWI76_RS27025: Xylose isomerase (EC 5.3.1.5) from Klebsiella michiganensis	60% id, 99% cov
PS417_10945: Xylose isomerase (EC 5.3.1.5) from Pseudomonas simiae	58% id, 99% cov
AO356_28500: Xylose isomerase (EC 5.3.1.5) from Pseudomonas fluorescens	58% id, 99% cov
C7G532: xylose isomerase (EC 5.3.1.5) from Vibrio sp.	56% id, 100% cov
BPHYT_RS32825: Xylose isomerase (EC 5.3.1.5) from Burkholderia phytofirmans	55% id, 98% cov
Q8A9M2: xylose isomerase (EC 5.3.1.5) from Bacteroides thetaiotaomicron	51% id, 99% cov
Q9P8C9: xylose isomerase (EC 5.3.1.5) from Piromyces sp.	49% id, 99% cov
D2DK62: xylose isomerase (EC 5.3.1.5) from Thermoanaerobacter ethanolicus	49% id, 99% cov
B7SLY1: xylose isomerase (EC 5.3.1.5) from Orpinomyces sp.	49% id, 99% cov
Echvi_1876: Xylose isomerase (EC 5.3.1.5) from Echinicola vietnamensis	49% id, 99% cov
XYLA_THESA / P30435: Xylose isomerase; EC 5.3.1.5 from Thermoanaerobacterium saccharolyticum	48% id, 99% cov
D9SR73: xylose isomerase (EC 5.3.1.5) from Clostridium cellulovorans	47% id, 99% cov
xylA / G2TH70: xylA (EC 5.3.1.5) from Weizmannia coagulans	47% id, 96% cov
A1A0H0: xylose isomerase (EC 5.3.1.5) from Bifidobacterium adolescentis	43% id, 97% cov
XYLA_LEVBR / P29443: Xylose isomerase; EC 5.3.1.5 from Levilactobacillus brevis	46% id, 90% cov
P24300: xylose isomerase (EC 5.3.1.5) from Streptomyces rubiginosus	28% id, 97% cov
P26997: xylose isomerase (EC 5.3.1.5) from Thermus thermophilus	28% id, 97% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory