Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 3 curated entries in PaperBLAST's database that match '5.4.1.4' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_0604: amidohydrolase 2 (RefSeq)
is similar to:
PaperBLAST

GLI_AGRFC / A9CEQ7: D-galactarolactone isomerase; GLI; Galactaro delta-lactone isomerase; EC 5.4.1.4 from Agrobacterium fabrum
gli / A9CEQ7: D-galactarolactone isomerase (EC 5.4.1.4) from Agrobacterium fabrum
A9CEQ7: D-galactarolactone isomerase (EC 5.4.1.4) from Agrobacterium tumefaciens

31% id,
94% cov

Dshi_0867: amidohydrolase 2 (RefSeq)
is similar to:
PaperBLAST

GLI_AGRFC / A9CEQ7: D-galactarolactone isomerase; GLI; Galactaro delta-lactone isomerase; EC 5.4.1.4 from Agrobacterium fabrum
gli / A9CEQ7: D-galactarolactone isomerase (EC 5.4.1.4) from Agrobacterium fabrum
A9CEQ7: D-galactarolactone isomerase (EC 5.4.1.4) from Agrobacterium tumefaciens

30% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory