Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 88 curated entries in PaperBLAST's database that match '5.4.99.5'.

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1284: chorismate mutase related enzyme (RefSeq)
is similar to:
PaperBLAST

PCHB_PSEAE / Q51507: Isochorismate pyruvate lyase; IPL; Chorismate mutase; CM; Salicylate biosynthesis protein; EC 4.2.99.21; EC 5.4.99.5 from Pseudomonas aeruginosa

41% id,
89% cov

Dshi_0653: Prephenate dehydratase (RefSeq)
is similar to:
PaperBLAST

CMPDT_PSEST / P27603: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Pseudomonas stutzeri

33% id,
73% cov

CMPDT_ECOLI / P0A9J8: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli
PheA / b2599: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli
CH_024084: P-protein; EC 4.2.1.51; EC 5.4.99.5 from Escherichia coli
pheA / P0A9J8: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli

32% id,
72% cov

C7EXK8: prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Escherichia coli

31% id,
72% cov

More...

Dshi_0583: 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq)
is similar to:
PaperBLAST

P39912: chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

29% id,
67% cov

Dshi_1796: anthranilate synthase component I (RefSeq)
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

29% id,
66% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

333635-334048 (frame -2) on 57145
is similar to:
PaperBLAST

CA265_RS11635: chorismate mutase (EC 5.4.99.5) from Pedobacter sp.

30% id,
23% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory