Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 193 curated entries in PaperBLAST's database that match '6.2.1.1'.

These curated entries have 146 distinct sequences.

Running ublast with E ≤ 0.01

Found 18 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_0825: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

PGA1_c11900: Propionate--CoA ligase (EC 6.2.1.17) from Phaeobacter inhibens

83% id,
100% cov

prpE / Q5LPB4: propionate--CoA ligase (EC 6.2.1.17) from Ruegeria pomeroyi

82% id,
100% cov

ACSS3_RAT / A0A0G2K047: Acyl-CoA synthetase short-chain family member 3, mitochondrial; Acetate--CoA ligase 3; Acyl-CoA synthetase short-chain family member 3; Propionate--CoA ligase; EC 6.2.1.1; EC 6.2.1.17 from Rattus norvegicus
A0A0G2K047: propionate-CoA ligase (EC 6.2.1.17) from Rattus norvegicus

54% id,
91% cov

More...

Dshi_3553: acetate--CoA ligase (RefSeq)
is similar to:
PaperBLAST

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

64% id,
100% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

64% id,
100% cov

ACSA_SALTY / Q8ZKF6: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Salmonella typhimurium

63% id,
98% cov

More...

Dshi_1399: acetate--CoA ligase (RefSeq)
is similar to:
PaperBLAST

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

64% id,
99% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

64% id,
99% cov

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.17; EC 6.2.1.1) from Escherichia coli

63% id,
98% cov

More...

Dshi_3403: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

57% id,
99% cov

4CLL1_ARATH / Q9LQ12: 4-coumarate--CoA ligase-like 1; 4-coumarate--CoA ligase isoform 10; At4CL10; EC 6.2.1.12 from Arabidopsis thaliana

32% id,
95% cov

F1CYZ6: 4-coumarate-CoA ligase (EC 6.2.1.12) from Acetobacterium woodii

30% id,
98% cov

More...

Dshi_0833: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

AEE7_ARATH / Q8VZF1: Acetate/butyrate--CoA ligase AAE7, peroxisomal; AMP-binding protein 7; AtAMPBP7; Acetyl-CoA synthetase; Acyl-activating enzyme 7; Butyryl-CoA synthetase; Protein ACETATE NON-UTILIZING 1; EC 6.2.1.1; EC 6.2.1.2 from Arabidopsis thaliana

52% id,
97% cov

CCL3_HUMLU / M4IS88: Acetate--CoA ligase CCL3; HlCCL3; 2-methylbutanoate--CoA ligase CCL4; 2-methylpropanoate--CoA ligase CCL4; Butanoate--CoA ligase CCL3; Hexanoate--CoA ligase CCL3; Isovalerate--CoA ligase CCL3; Pentanoate--CoA ligase CCL3; Propionate--CoA ligase CCL3; EC 6.2.1.1; EC 6.2.1.-; EC 6.2.1.17 from Humulus lupulus

50% id,
99% cov

CCL4_HUMLU / M4IQQ5: 2-methylpropanoate--CoA ligase CCL4; HlCCL4; 2-methylbutanoate--CoA ligase CCL4; Butanoate--CoA ligase CCL3; Propionate--CoA ligase CCL3; EC 6.2.1.-; EC 6.2.1.17 from Humulus lupulus
CCL4 / M4IQQ5: isobutanoate/2-methylbutanoate--CoA ligase (EC 6.2.1.1) from Humulus lupulus

49% id,
96% cov

More...

Dshi_1217: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

45% id,
91% cov

4CL1 / A0A4Y5UJ50: 4-coumarate:CoA ligase (EC 6.2.1.12; EC 6.2.1.34) from Avena sativa

31% id,
88% cov

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

30% id,
91% cov

More...

Dshi_0253: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

B8QN50: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus radiata

42% id,
98% cov

P41636: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus taeda

41% id,
98% cov

D5LLN7: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

41% id,
97% cov

More...

Dshi_2999: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

32% id,
98% cov

4CL5_ORYSJ / Q6ZAC1: 4-coumarate--CoA ligase 5; 4CL 5; Os4CL5; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 5; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q6ZAC1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

32% id,
95% cov

Q8S564: 4-coumarate-CoA ligase (EC 6.2.1.12) from Glycine max

30% id,
94% cov

More...

Dshi_2882: succinyl-CoA synthetase, alpha subunit (RefSeq)
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

36% id,
84% cov

Dshi_1000: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

32% id,
94% cov

4CL3_ORYSJ / Q6ETN3: 4-coumarate--CoA ligase 3; 4CL 3; Os4CL3; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 3; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q6ETN3: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

32% id,
94% cov

B3TJI5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Ruta graveolens

31% id,
94% cov

More...

Dshi_2492: succinyl-CoA synthetase, alpha subunit (RefSeq)
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

35% id,
81% cov

C4LUV9: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

23% id,
36% cov

ACD_METJA / Q58010: Acetate--CoA ligase [ADP-forming]; ADP-forming acetyl coenzyme A synthetase; ACS; EC 6.2.1.13 from Methanocaldococcus jannaschii

24% id,
30% cov

More...

Dshi_0700: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

4CL5_ORYSJ / Q6ZAC1: 4-coumarate--CoA ligase 5; 4CL 5; Os4CL5; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 5; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q6ZAC1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

30% id,
94% cov

4CL3_ORYSJ / Q6ETN3: 4-coumarate--CoA ligase 3; 4CL 3; Os4CL3; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 3; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q6ETN3: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

31% id,
90% cov

4CL1 / A0A4Y5UJ50: 4-coumarate:CoA ligase (EC 6.2.1.12; EC 6.2.1.34) from Avena sativa

30% id,
92% cov

More...

Dshi_0853: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

4CL2_NARPS / A0A2H5AIY4: 4-coumarate-CoA ligase 2; EC 6.2.1.12 from Narcissus pseudonarcissus

30% id,
90% cov

CNL_PETHY / I3PB36: Trans-cinnamate:CoA ligase, peroxisomal; Cinnamic acid:CoA ligase; Ph-CNL; PhCNL; (E)-caffeate:CoA ligase CNL; 4-coumarate:CoA ligase CNL; Protein ACYL-ACTIVATING ENZYME; PhAAE; EC 6.2.1.-; EC 6.2.1.12 from Petunia hybrida
CNL / I3PB36: cinnamate:CoA ligase (EC 6.2.1.12) from Petunia hybrida

27% id,
97% cov

Q8S5C2: 4-coumarate-CoA ligase (EC 6.2.1.12) from Glycine max

30% id,
86% cov

More...

Dshi_2878: succinyl-CoA synthetase, beta subunit (RefSeq)
is similar to:
PaperBLAST

ccsA / Q75VW8: citryl-CoA synthetase large subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW8: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

31% id,
87% cov

Dshi_3722: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

D5LLN7: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

29% id,
91% cov

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

27% id,
97% cov

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

29% id,
91% cov

More...

Dshi_1556: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

25% id,
96% cov

HBCL1_METS5 / A4YDT1: 4-hydroxybutyrate--CoA ligase 1; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

26% id,
83% cov

ACSM3_MOUSE / Q3UNX5: Acyl-coenzyme A synthetase ACSM3, mitochondrial; Acyl-CoA synthetase medium-chain family member 3; Butyrate--CoA ligase 3; Butyryl-coenzyme A synthetase 3; Middle-chain acyl-CoA synthetase 3; Propionate--CoA ligase; Protein SA homolog; EC 6.2.1.2; EC 6.2.1.17 from Mus musculus

25% id,
85% cov

More...

Dshi_0373: Long-chain-fatty-acid--CoA ligase (RefSeq)
is similar to:
PaperBLAST

ACBG2_MOUSE / Q2XU92: Long-chain-fatty-acid--CoA ligase ACSBG2; Acyl-CoA synthetase bubblegum family member 2; Arachidonate--CoA ligase ACSBG2; Bubblegum-related protein; EC 6.2.1.3; EC 6.2.1.15 from Mus musculus

24% id,
93% cov

ACBG2_HUMAN / Q5FVE4: Long-chain-fatty-acid--CoA ligase ACSBG2; Acyl-CoA synthetase bubblegum family member 2; Arachidonate--CoA ligase ACSBG2; Bubblegum-related protein; PRTD-NY3; EC 6.2.1.3; EC 6.2.1.15 from Homo sapiens

24% id,
92% cov

ACSL5_RAT / O88813: Long-chain-fatty-acid--CoA ligase 5; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 5; LACS 5; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

26% id,
85% cov

More...

Dshi_2491: succinyl-CoA synthetase, beta subunit (RefSeq)
is similar to:
PaperBLAST

ACD_METJA / Q58010: Acetate--CoA ligase [ADP-forming]; ADP-forming acetyl coenzyme A synthetase; ACS; EC 6.2.1.13 from Methanocaldococcus jannaschii

25% id,
29% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 18 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory