Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 13 curated entries in PaperBLAST's database that match '6.2.1.30' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_3824: phenylacetate-CoA ligase (RefSeq)
is similar to:
PaperBLAST

B4E7B5: phenylacetate-CoA ligase (EC 6.2.1.30) from Burkholderia cenocepacia

66% id,
98% cov

B4EL89: phenylacetate-CoA ligase (EC 6.2.1.30) from Burkholderia cenocepacia

66% id,
98% cov

PAAK_AROEV / Q9L9C1: Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 from Aromatoleum evansii
paaK / Q9L9C1: phenylacetate-CoA ligase (aerobic) (EC 6.2.1.30) from Aromatoleum evansii

64% id,
99% cov

More...

Dshi_0253: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

40% id,
86% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

38% id,
89% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

36% id,
91% cov

Dshi_2999: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

31% id,
93% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
94% cov

Dshi_0833: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

29% id,
96% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

30% id,
45% cov

Dshi_0382: phenylacetate-CoA ligase, putative (RefSeq)
is similar to:
PaperBLAST

B4E7B5: phenylacetate-CoA ligase (EC 6.2.1.30) from Burkholderia cenocepacia

29% id,
96% cov

PAAK_THET2 / Q72K16: Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 from Thermus thermophilus
Q72K16: phenylacetate-CoA ligase (EC 6.2.1.30) from Thermus thermophilus

30% id,
77% cov

Dshi_1000: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

31% id,
90% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

29% id,
90% cov

Dshi_3722: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

30% id,
93% cov

Dshi_0700: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

29% id,
94% cov

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

35% id,
12% cov

Dshi_3403: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
97% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

29% id,
91% cov

phl / O74725: phenylacetyl-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
O74725: medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
90% cov

Dshi_1217: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

27% id,
94% cov

Dshi_0825: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

23% id,
96% cov

Dshi_0373: Long-chain-fatty-acid--CoA ligase (RefSeq)
is similar to:
PaperBLAST

A7KUK6: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

25% id,
34% cov

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

28% id,
29% cov

Dshi_1556: AMP-dependent synthetase and ligase (RefSeq)
is similar to:
PaperBLAST

D3GE78: phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum

33% id,
12% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory