Curated BLAST for Genomes


Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 2 curated entries in PaperBLAST's database that match '5-deoxy-glucuronate isomerase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_1279: Myo-inositol catabolism IolB domain protein (RefSeq)
is similar to:

IOLB_BACSU / P42413: 5-deoxy-glucuronate isomerase; 5DG isomerase; EC from Bacillus subtilis
P42413: 5-deoxy-glucuronate isomerase (EC from Bacillus subtilis

41% id,
100% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory