Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 21 curated entries in PaperBLAST's database that match 'Glycine cleavage system H' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_2681: glycine cleavage system H protein (RefSeq)
is similar to:
PaperBLAST

GCSH_ECOLI / P0A6T9: Glycine cleavage system H protein from Escherichia coli
Gcv / b2904: glycine cleavage system H protein from Escherichia coli
gcvH / P0A6T9: glycine cleavage system H protein from Escherichia coli

51% id,
91% cov

GCSH_THET8 / Q5SKW9: Glycine cleavage system H protein from Thermus thermophilus

50% id,
91% cov

gcvH / P73560: glycine cleavage system H-protein (EC 1.4.1.27) from Synechocystis sp.

45% id,
90% cov

More...

Dshi_1967: catalytic domain of components of various dehydrogenase complexes (RefSeq)
is similar to:
PaperBLAST

GCVHL_STRPG / P0DN69: Glycine cleavage system H-like protein; GcvH-L from Streptococcus pyogenes

28% id,
81% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory