Searching in Dinoroseobacter shibae DFL-12 (Dino)
Found 60 curated entries in PaperBLAST's database that match 'Serine hydroxymethyltransferase' as complete word(s).
These curated entries have 48 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query
| Dshi_0821: Glycine hydroxymethyltransferase (RefSeq) is similar to: | PaperBLAST |
glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum | 73% id, 97% cov |
GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei | 68% id, 99% cov |
4n0wA / B4ECY9: X-ray crystal structure of a serine hydroxymethyltransferase from burkholderia cenocepacia with covalently attached pyridoxal phosphate | 64% id, 98% cov |
1kkjA / Q7SIB6: Crystal structure of serine hydroxymethyltransferase from b.Stearothermophilus | 60% id, 99% cov |
2dkjA / Q5SI56: Crystal structure of t.Th.Hb8 serine hydroxymethyltransferase | 59% id, 100% cov |
GLYA_SALTY / P0A2E1: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Salmonella typhimurium | 60% id, 98% cov |
GLYA_THET8 / Q5SI56: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Thermus thermophilus | 59% id, 99% cov |
GLYA_ECOLI / P0A825: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Escherichia coli | 59% id, 98% cov |
6ymdA / I7H6W6: Crystal structure of serine hydroxymethyltransferase from aphanothece halophytica in the covalent complex with malonate | 59% id, 98% cov |
GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus | 59% id, 96% cov |
GLYA_STAAC / Q5HE87: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Staphylococcus aureus | 57% id, 99% cov |
GLYA_BACSU / P39148: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Bacillus subtilis | 55% id, 99% cov |
3pgyB / Q5HE87: Serine hydroxymethyltransferase from staphylococcus aureus, s95p mutant. | 55% id, 99% cov |
GLYA2_MYCTU / P9WGI7: Serine hydroxymethyltransferase 2; SHM2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Mycobacterium tuberculosis | 55% id, 99% cov |
GLYA_METBF / Q46A52: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Methanosarcina barkeri | 55% id, 98% cov |
GLYA_CAMJE / P24531: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Campylobacter jejuni | 54% id, 99% cov |
6uldA: Crystal structure of serine hydroxymethyltransferase from mycobacterium tuberculosis with bound plp forming a schiff base with substrate serine in one monomer and plp forming a schiff base with product glycine in the other monomer | 53% id, 98% cov |
GLYA1_MYCTU / P9WGI9: Serine hydroxymethyltransferase 1; SHM1; SHMT 1; Serine methylase 1; EC 2.1.2.1 from Mycobacterium tuberculosis | 52% id, 97% cov |
1rv3B / P07511: E75l mutant of rabbit cytosolic serine hydroxymethyltransferase, complex with glycine | 46% id, 98% cov |
6cd1A / G7ILW0: Crystal structure of medicago truncatula serine hydroxymethyltransferase 3 (mtshmt3), complexes with reaction intermediates | 50% id, 89% cov |
GLYC_HUMAN / P34896: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Homo sapiens | 45% id, 99% cov |
GLYC_SHEEP / P35623: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Ovis aries | 46% id, 95% cov |
GLYC_RABIT / P07511: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Oryctolagus cuniculus | 45% id, 95% cov |
GLYC_MOUSE / P50431: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Mus musculus | 48% id, 86% cov |
1ejiA / P50431: Recombinant serine hydroxymethyltransferase (mouse) | 48% id, 86% cov |
6smrA / O23254: A. Thaliana serine hydroxymethyltransferase isoform 4 (atshmt4) in complex with methotrexate | 46% id, 88% cov |
GLYC4_ARATH / O23254: Serine hydroxymethyltransferase 4; AtSHMT4; Glycine hydroxymethyltransferase 4; Serine methylase 4; EC 2.1.2.1 from Arabidopsis thaliana | 47% id, 86% cov |
7e13A: Caprylic acid targets a serine hydroxymethyltransferase to kill horseweed | 43% id, 94% cov |
GLYC_CANAL / O13426: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; SHMII; Serine methylase; EC 2.1.2.1 from Candida albicans | 41% id, 99% cov |
8dskA / A0A0R0IK90: Structure of the n358y variant of serine hydroxymethyltransferase 8 in complex with plp, glycine, and formyl tetrahydrofolate | 46% id, 86% cov |
GLYC_YEAST / P37291: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Saccharomyces cerevisiae | 40% id, 98% cov |
GLYC_EREGS / Q75BQ6: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Eremothecium gossypii | 40% id, 97% cov |
GLYC_BOMMO / Q2F5L3: Serine hydroxymethyltransferase; SHMT; Glycine hydroxymethyltransferase; Serine methylase; bmSHMT; EC 2.1.2.1 from Bombyx mori | 45% id, 88% cov |
SHMT / Q8W4V3: serine hydroxymethyltransferase (EC 2.1.2.1) from Chlamydomonas reinhardtii | 50% id, 78% cov |
GLYM_YEAST / P37292: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Saccharomyces cerevisiae | 42% id, 93% cov |
6smnD / Q94C74: A. Thaliana serine hydroxymethyltransferase isoform 2 (atshmt2) in complex with methotrexate | 46% id, 83% cov |
GLYM_MOUSE / Q9CZN7: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Mus musculus | 48% id, 80% cov |
GLYM_EREGS / Q758F0: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Eremothecium gossypii | 46% id, 82% cov |
GLYM_HUMAN / P34897: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Homo sapiens | 47% id, 80% cov |
GLYM1_ARATH / Q9SZJ5: Serine hydroxymethyltransferase 1, mitochondrial; AtSHMT1; Glycine hydroxymethyltransferase 1; Serine Transhydroxymethyltransferase; STM; Serine methylase 1; EC 2.1.2.1 from Arabidopsis thaliana | 43% id, 86% cov |
GLYM_SCHPO / Q10104: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Schizosaccharomyces pombe | 45% id, 83% cov |
GLYA_PLAF7 / Q8I566: Serine hydroxymethyltransferase; PfSHMTc; EC 2.1.2.1 from Plasmodium falciparum | 41% id, 90% cov |
4o6zA / Q8I566: Crystal structure of serine hydroxymethyltransferase with covalently bound plp schiff-base from plasmodium falciparum | 41% id, 90% cov |
GLYP3_ARATH / Q94JQ3: Serine hydroxymethyltransferase 3, chloroplastic; AtSHM3; AtSHMT3; Glycine hydroxymethyltransferase 3; Serine methylase 3; EC 2.1.2.1 from Arabidopsis thaliana | 49% id, 76% cov |
GLYM2_ARATH / Q94C74: Serine hydroxymethyltransferase 2, mitochondrial; AtSHMT2; Glycine hydroxymethyltransferase 2; Serine methylase 2; EC 2.1.2.1 from Arabidopsis thaliana | 46% id, 77% cov |
GLYA_METTH / O27433: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.- from Methanothermobacter thermautotrophicus | 37% id, 91% cov |
GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii | 38% id, 86% cov |
GLYA_SACS2 / Q9UWT5: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.- from Saccharolobus solfataricus | 30% id, 93% cov |
| Dshi_2113: Glycine hydroxymethyltransferase (RefSeq) is similar to: | PaperBLAST |
GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei | 68% id, 96% cov |
glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum | 69% id, 95% cov |
4n0wA / B4ECY9: X-ray crystal structure of a serine hydroxymethyltransferase from burkholderia cenocepacia with covalently attached pyridoxal phosphate | 63% id, 99% cov |
2dkjA / Q5SI56: Crystal structure of t.Th.Hb8 serine hydroxymethyltransferase | 61% id, 99% cov |
GLYA_THET8 / Q5SI56: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Thermus thermophilus | 60% id, 100% cov |
1kkjA / Q7SIB6: Crystal structure of serine hydroxymethyltransferase from b.Stearothermophilus | 60% id, 98% cov |
GLYA_BACSU / P39148: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Bacillus subtilis | 60% id, 98% cov |
GLYA_STAAC / Q5HE87: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Staphylococcus aureus | 59% id, 98% cov |
GLYA_ECOLI / P0A825: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Escherichia coli | 57% id, 100% cov |
6ymdA / I7H6W6: Crystal structure of serine hydroxymethyltransferase from aphanothece halophytica in the covalent complex with malonate | 59% id, 96% cov |
GLYA_SALTY / P0A2E1: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Salmonella typhimurium | 57% id, 100% cov |
3pgyB / Q5HE87: Serine hydroxymethyltransferase from staphylococcus aureus, s95p mutant. | 57% id, 99% cov |
GLYA2_MYCTU / P9WGI7: Serine hydroxymethyltransferase 2; SHM2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Mycobacterium tuberculosis | 56% id, 99% cov |
GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus | 59% id, 95% cov |
6uldA: Crystal structure of serine hydroxymethyltransferase from mycobacterium tuberculosis with bound plp forming a schiff base with substrate serine in one monomer and plp forming a schiff base with product glycine in the other monomer | 56% id, 95% cov |
GLYA_METBF / Q46A52: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Methanosarcina barkeri | 53% id, 99% cov |
GLYA_CAMJE / P24531: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Campylobacter jejuni | 54% id, 97% cov |
GLYA1_MYCTU / P9WGI9: Serine hydroxymethyltransferase 1; SHM1; SHMT 1; Serine methylase 1; EC 2.1.2.1 from Mycobacterium tuberculosis | 56% id, 93% cov |
6cd1A / G7ILW0: Crystal structure of medicago truncatula serine hydroxymethyltransferase 3 (mtshmt3), complexes with reaction intermediates | 49% id, 87% cov |
1rv3B / P07511: E75l mutant of rabbit cytosolic serine hydroxymethyltransferase, complex with glycine | 47% id, 89% cov |
GLYC_BOMMO / Q2F5L3: Serine hydroxymethyltransferase; SHMT; Glycine hydroxymethyltransferase; Serine methylase; bmSHMT; EC 2.1.2.1 from Bombyx mori | 42% id, 97% cov |
GLYC_RABIT / P07511: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Oryctolagus cuniculus | 47% id, 87% cov |
GLYC4_ARATH / O23254: Serine hydroxymethyltransferase 4; AtSHMT4; Glycine hydroxymethyltransferase 4; Serine methylase 4; EC 2.1.2.1 from Arabidopsis thaliana | 46% id, 87% cov |
GLYC_HUMAN / P34896: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Homo sapiens | 46% id, 87% cov |
6smrA / O23254: A. Thaliana serine hydroxymethyltransferase isoform 4 (atshmt4) in complex with methotrexate | 46% id, 86% cov |
GLYC_SHEEP / P35623: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Ovis aries | 45% id, 88% cov |
GLYC_MOUSE / P50431: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Mus musculus | 45% id, 88% cov |
1ejiA / P50431: Recombinant serine hydroxymethyltransferase (mouse) | 45% id, 88% cov |
8dskA / A0A0R0IK90: Structure of the n358y variant of serine hydroxymethyltransferase 8 in complex with plp, glycine, and formyl tetrahydrofolate | 45% id, 86% cov |
GLYC_EREGS / Q75BQ6: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Eremothecium gossypii | 43% id, 90% cov |
6smnD / Q94C74: A. Thaliana serine hydroxymethyltransferase isoform 2 (atshmt2) in complex with methotrexate | 44% id, 88% cov |
GLYC_YEAST / P37291: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Saccharomyces cerevisiae | 43% id, 90% cov |
7e13A: Caprylic acid targets a serine hydroxymethyltransferase to kill horseweed | 46% id, 83% cov |
GLYC_CANAL / O13426: Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; SHMII; Serine methylase; EC 2.1.2.1 from Candida albicans | 45% id, 84% cov |
SHMT / Q8W4V3: serine hydroxymethyltransferase (EC 2.1.2.1) from Chlamydomonas reinhardtii | 47% id, 80% cov |
GLYM_SCHPO / Q10104: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Schizosaccharomyces pombe | 43% id, 87% cov |
GLYM_MOUSE / Q9CZN7: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Mus musculus | 44% id, 84% cov |
GLYM_YEAST / P37292: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Saccharomyces cerevisiae | 43% id, 88% cov |
GLYM_EREGS / Q758F0: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Eremothecium gossypii | 43% id, 86% cov |
GLYM_HUMAN / P34897: Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1 from Homo sapiens | 47% id, 78% cov |
GLYM2_ARATH / Q94C74: Serine hydroxymethyltransferase 2, mitochondrial; AtSHMT2; Glycine hydroxymethyltransferase 2; Serine methylase 2; EC 2.1.2.1 from Arabidopsis thaliana | 44% id, 82% cov |
GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii | 39% id, 89% cov |
GLYP3_ARATH / Q94JQ3: Serine hydroxymethyltransferase 3, chloroplastic; AtSHM3; AtSHMT3; Glycine hydroxymethyltransferase 3; Serine methylase 3; EC 2.1.2.1 from Arabidopsis thaliana | 46% id, 75% cov |
GLYA_PLAF7 / Q8I566: Serine hydroxymethyltransferase; PfSHMTc; EC 2.1.2.1 from Plasmodium falciparum | 39% id, 88% cov |
GLYM1_ARATH / Q9SZJ5: Serine hydroxymethyltransferase 1, mitochondrial; AtSHMT1; Glycine hydroxymethyltransferase 1; Serine Transhydroxymethyltransferase; STM; Serine methylase 1; EC 2.1.2.1 from Arabidopsis thaliana | 45% id, 76% cov |
4o6zA / Q8I566: Crystal structure of serine hydroxymethyltransferase with covalently bound plp schiff-base from plasmodium falciparum | 39% id, 87% cov |
GLYA_METTH / O27433: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.- from Methanothermobacter thermautotrophicus | 38% id, 89% cov |
GLYA_SACS2 / Q9UWT5: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.- from Saccharolobus solfataricus | 33% id, 85% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
Lawrence Berkeley National Laboratory