Curated BLAST for Genomes

 

Curated BLAST

Searching in Dinoroseobacter shibae DFL-12 (Dino)

Found 3 curated entries in PaperBLAST's database that match 'homoaconitase large subunit' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Dinoroseobacter shibae DFL-12, or try another query

Dshi_0695: 3-isopropylmalate dehydratase, large subunit (RefSeq)
is similar to:
PaperBLAST

HACA_METJA / Q58409: Methanogen homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

35% id,
99% cov

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

34% id,
98% cov

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

47% id,
32% cov

More...

Dshi_0085: 3-isopropylmalate dehydratase, large subunit (RefSeq)
is similar to:
PaperBLAST

HACA_METJA / Q58409: Methanogen homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

34% id,
100% cov

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

48% id,
31% cov

Dshi_2060: aconitate hydratase 2 (RefSeq)
is similar to:
PaperBLAST

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

24% id,
56% cov

Dshi_1851: aconitate hydratase 1 (RefSeq)
is similar to:
PaperBLAST

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

28% id,
49% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory