Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Desulfovibrio vulgaris Hildenborough JW710 (DvH)

Found 5 curated entries in PaperBLAST's database that match '4.1.2.20' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfovibrio vulgaris Hildenborough JW710, or try another query

DVU0343: HPCH/HPAI aldolase family protein (TIGR) is similar to:	PaperBLAST
GARL_ECOLI / P23522: 5-keto-4-deoxy-D-glucarate aldolase; KDGluc aldolase; KDGlucA; 2-dehydro-3-deoxy-D-glucarate aldolase; 2-keto-3-deoxy-D-glucarate aldolase; 5-dehydro-4-deoxy-D-glucarate aldolase; Alpha-keto-beta-deoxy-D-glucarate aldolase; EC 4.1.2.20 from Escherichia coli YhaF / b3126: α-dehydro-β-deoxy-D-glucarate aldolase (EC 4.1.2.20) from Escherichia coli garL / P23522: α-dehydro-β-deoxy-D-glucarate aldolase (EC 4.1.2.20) from Escherichia coli	34% id, 97% cov
GARL_ECO7I / B7NJZ1: 5-keto-4-deoxy-D-glucarate aldolase; KDGluc aldolase; KDGlucA; 2-dehydro-3-deoxy-D-glucarate aldolase; 2-keto-3-deoxy-D-glucarate aldolase; 5-dehydro-4-deoxy-D-glucarate aldolase; Alpha-keto-beta-deoxy-D-glucarate aldolase; EC 4.1.2.20 from Escherichia coli	34% id, 97% cov

DVU1868: dihydrodipicolinate synthase (TIGR) is similar to:	PaperBLAST
P75682: 2-dehydro-3-deoxyglucarate aldolase (EC 4.1.2.20) from Escherichia coli	31% id, 96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

388425-389540 (frame -2) on 1944 is similar to:	PaperBLAST
GARL_ECO7I / B7NJZ1: 5-keto-4-deoxy-D-glucarate aldolase; KDGluc aldolase; KDGlucA; 2-dehydro-3-deoxy-D-glucarate aldolase; 2-keto-3-deoxy-D-glucarate aldolase; 5-dehydro-4-deoxy-D-glucarate aldolase; Alpha-keto-beta-deoxy-D-glucarate aldolase; EC 4.1.2.20 from Escherichia coli Also see hits to annotated proteins above	33% id, 100% cov
GARL_ECOLI / P23522: 5-keto-4-deoxy-D-glucarate aldolase; KDGluc aldolase; KDGlucA; 2-dehydro-3-deoxy-D-glucarate aldolase; 2-keto-3-deoxy-D-glucarate aldolase; 5-dehydro-4-deoxy-D-glucarate aldolase; Alpha-keto-beta-deoxy-D-glucarate aldolase; EC 4.1.2.20 from Escherichia coli YhaF / b3126: α-dehydro-β-deoxy-D-glucarate aldolase (EC 4.1.2.20) from Escherichia coli garL / P23522: α-dehydro-β-deoxy-D-glucarate aldolase (EC 4.1.2.20) from Escherichia coli Also see hits to annotated proteins above	33% id, 100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory