Curated BLAST for Genomes

 

Curated BLAST

Searching in Dyella japonica UNC79MFTsu3.2 (Dyella79)

Found 5 curated entries in PaperBLAST's database that match '1.1.1.122' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Dyella japonica UNC79MFTsu3.2, or try another query

N515DRAFT_1255: D-threo-aldose 1-dehydrogenase
is similar to:
PaperBLAST

BPHYT_RS34225: L-fucose dehydrogenase (EC 1.1.1.122) from Burkholderia phytofirmans

43% id,
95% cov

FCDH_PSESP / Q52472: D-threo-aldose 1-dehydrogenase; L-fucose dehydrogenase; EC 1.1.1.122 from Pseudomonas sp.
Q52472: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Pseudomonas sp.

36% id,
97% cov

N515DRAFT_2489: alcohol dehydrogenase, propanol-preferring
is similar to:
PaperBLAST

Q97YM2: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Saccharolobus solfataricus

30% id,
97% cov

N515DRAFT_2454: alcohol dehydrogenase, propanol-preferring
is similar to:
PaperBLAST

Q97YM2: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Saccharolobus solfataricus

27% id,
97% cov

N515DRAFT_0878: alcohol dehydrogenase
is similar to:
PaperBLAST

Q97YM2: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Saccharolobus solfataricus

28% id,
95% cov

N515DRAFT_0989: Predicted oxidoreductase
is similar to:
PaperBLAST

FCDH_PSESP / Q52472: D-threo-aldose 1-dehydrogenase; L-fucose dehydrogenase; EC 1.1.1.122 from Pseudomonas sp.
Q52472: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Pseudomonas sp.

28% id,
92% cov

N515DRAFT_0039: L-threonine 3-dehydrogenase
is similar to:
PaperBLAST

Q97YM2: D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Saccharolobus solfataricus

26% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory